Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.0e-251 872.8 427 100.0
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 2.0e-218 762.3 409 89.5
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 4.4e-218 761.1 409 89.5
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 8.1e-204 713.8 435 81.6
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 1.5e-197 693.0 425 80.2
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.6e-183 646.4 390 79.7
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.6e-183 646.4 409 76.8
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.8e-182 642.9 434 73.7
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.4e-179 633.3 399 76.4
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 4.5e-178 628.2 425 71.8
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.7e-177 626.3 394 75.6
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.1e-176 623.6 428 72.2
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 9.3e-176 620.5 410 72.4
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.6e-175 619.8 394 75.6
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 2.1e-175 619.4 389 75.8
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 2.1e-175 619.4 436 70.2
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 2.3e-174 615.9 395 75.2
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.9e-174 615.1 413 71.4
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 6.7e-174 614.4 425 70.8
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 6.7e-174 614.4 424 70.3
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 6.7e-174 614.4 425 69.9
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.3e-172 610.1 390 75.4
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.1e-171 607.1 408 72.3
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.4e-171 606.7 391 74.7
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 3.1e-171 605.5 394 73.1
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 6.9e-171 604.4 408 71.8
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 2.0e-170 602.8 394 72.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 2.0e-170 602.8 458 65.5
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 2.0e-170 602.8 400 72.0
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 2.6e-170 602.4 391 72.9
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 1.7e-169 599.7 418 69.6
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 1.7e-169 599.7 401 71.3
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 3.8e-169 598.6 391 74.7
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.9e-168 596.3 421 69.1
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.5e-168 595.9 425 67.8
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 5.5e-168 594.7 398 72.6
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.2e-167 593.6 396 71.5
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.6e-167 593.2 396 71.5
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.7e-167 592.4 395 73.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 3.6e-167 592.0 403 71.0
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 4.6e-167 591.7 453 65.3
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 6.1e-167 591.3 392 72.7
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 6.1e-167 591.3 403 71.7
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 7.9e-167 590.9 416 69.5
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 5.1e-166 588.2 391 73.7
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 1.9e-165 586.3 391 72.9
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 4.3e-165 585.1 391 72.6
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 5.7e-165 584.7 394 73.1
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.7e-164 583.2 406 70.7
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 6.9e-163 577.8 449 64.8
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 9.1e-163 577.4 391 72.1
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 3.4e-162 575.5 474 62.7
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 8.5e-161 570.9 372 75.0
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 1.6e-159 566.6 429 65.3
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 6.1e-159 564.7 425 64.2
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.0e-158 563.9 404 68.6
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.3e-158 562.8 418 65.8
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.1e-157 560.5 427 67.2
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 3.3e-157 558.9 423 65.0
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 5.7e-157 558.1 404 66.8
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 7.4e-157 557.8 392 68.4
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.2e-156 556.2 412 68.0
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 2.2e-156 556.2 397 68.8
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 3.1e-155 552.4 395 68.9
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 9.1e-155 550.8 394 68.3
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.2e-154 550.4 395 68.1
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.5e-154 550.1 393 68.4
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.5e-154 550.1 399 66.9
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.5e-154 550.1 416 64.7
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 2.0e-154 549.7 393 66.2
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 5.9e-154 548.1 425 66.1
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 5.9e-154 548.1 425 66.1
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 5.9e-154 548.1 416 64.4
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.0e-153 547.4 463 59.2
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.3e-153 547.0 393 66.4
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.1e-152 543.9 393 68.2
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.1e-152 543.9 413 66.1
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.6e-151 538.9 392 66.8
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 8.0e-151 537.7 427 64.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.0e-150 537.3 441 62.6
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 2.8e-148 529.3 466 58.2
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 7.7e-146 521.2 357 70.3
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 2.5e-144 516.2 396 65.4
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 9.4e-144 514.2 331 74.3
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.0e-142 510.8 398 65.1
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 9.7e-141 504.2 393 64.6
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.6e-135 486.9 361 66.2
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 4.7e-135 485.3 331 70.7
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.1e-131 474.2 309 74.1
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.9e-129 466.1 393 61.1
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 6.6e-129 464.9 306 73.9
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 5.5e-128 461.8 329 66.6
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 4.0e-126 455.7 325 67.4
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.2e-122 444.1 281 76.2
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.0e-121 441.0 336 67.3
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.3e-120 436.0 395 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.5e-117 427.2 396 53.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.5e-112 410.6 342 59.9
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 2.1e-111 406.8 341 62.2
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.0e-105 386.3 358 53.6
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 3.9e-105 386.0 288 65.3
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 8.1e-103 378.3 409 48.4
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 2.6e-101 373.2 283 64.7
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 2.6e-101 373.2 283 64.7
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.6e-98 364.0 407 50.1
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.2e-95 354.4 213 77.9
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.8e-95 353.2 241 71.8
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 3.3e-88 329.7 240 65.4
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 9.3e-83 311.6 236 63.6
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 2.7e-82 310.1 438 41.8
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.4e-78 297.7 351 48.4
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 9.3e-75 285.0 189 69.8
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 2.7e-58 230.3 159 71.7
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.8e-57 227.6 148 73.6
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.4e-54 218.0 157 68.2
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.2e-53 214.9 161 65.2
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 6.5e-52 209.1 145 69.0
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 5.5e-51 206.1 406 35.7
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.1e-50 204.1 249 46.2
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.7e-50 203.8 169 60.9
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.2e-37 161.8 435 30.1
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 5.9e-37 159.5 120 66.7
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.7e-37 159.1 428 29.4
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 9.4e-35 152.1 454 28.2
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.1e-34 151.0 415 30.1
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.0e-33 148.7 418 28.9
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.2e-29 135.2 82 72.0
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 8.5e-28 129.0 113 55.8
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.5e-27 128.3 87 69.0
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.6e-26 124.8 235 36.2
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 5.2e-25 119.8 95 67.4
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 4.8e-23 113.2 79 65.8
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.1e-22 112.1 97 61.9
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 3.5e-21 107.1 269 30.9
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 9.4e-19 99.0 95 56.8
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 3.5e-13 80.5 74 52.7
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.7e-12 78.2 72 55.6
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 3.6e-10 70.5 37 94.6


User provided reference genes

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