Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 8.1e-67 256.9 128 100.0
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 3.7e-19 98.6 64 79.7
RcHm_v2.0_Chr4g0407971 Rosa chinensis HOM05D004978 ORTHO05D005621 2.4e-18 95.9 52 94.2
RcHm_v2.0_Chr2g0095571 Rosa chinensis HOM05D004978 ORTHO05D005621 3.5e-17 92.0 64 78.1
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 3.8e-16 88.6 51 84.3
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.5e-15 86.7 54 79.6
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 5.5e-15 84.7 51 82.4
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.2e-14 83.6 48 87.5
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 6.1e-14 81.3 51 78.4
RcHm_v2.0_Chr2g0171851 Rosa chinensis HOM05D004978 ORTHO05D005621 3.7e-11 72.0 52 76.9
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 3.1e-10 68.9 43 76.7
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 5.4e-10 68.2 64 56.2
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 7.0e-10 67.8 64 54.7
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.2e-09 67.0 46 71.7
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-09 67.0 64 54.7
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.6e-09 66.6 42 76.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.6e-09 66.6 45 73.3
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.6e-09 66.6 43 74.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.6e-09 66.6 42 76.2
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.0e-09 66.2 38 78.9
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 2.0e-09 66.2 64 54.7
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.0e-09 66.2 42 76.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-09 66.2 42 76.2
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 2.0e-09 66.2 42 73.8
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.0e-09 66.2 42 73.8
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.0e-09 66.2 42 76.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.7e-09 65.9 42 76.2
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.7e-09 65.9 42 76.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.7e-09 65.9 42 76.2
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 2.7e-09 65.9 51 64.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 3.5e-09 65.5 42 73.8
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.5e-09 65.5 43 72.1
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.5e-09 65.5 46 69.6
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.5e-09 65.5 31 93.5
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.5e-09 65.5 64 54.7
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.5e-09 65.5 42 73.8
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 4.5e-09 65.1 43 72.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 73.8
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 73.8
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.5e-09 65.1 46 67.4
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 73.8
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 73.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 73.8
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 71.4
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 71.4
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.5e-09 65.1 42 73.8
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.5e-09 65.1 46 69.6
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.5e-09 65.1 46 69.6
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.9e-09 64.7 41 75.6
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 5.9e-09 64.7 42 73.8
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.9e-09 64.7 64 53.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.9e-09 64.7 42 73.8
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.9e-09 64.7 42 71.4
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 7.7e-09 64.3 42 73.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.7e-09 64.3 42 73.8
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.0e-08 63.9 40 75.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.0e-08 63.9 64 53.1
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.0e-08 63.9 42 73.8
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.0e-08 63.9 42 73.8
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.0e-08 63.9 47 70.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.0e-08 63.9 42 71.4
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.0e-08 63.9 43 67.4
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-08 63.5 42 73.8
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.3e-08 63.5 42 73.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.3e-08 63.5 42 73.8
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.7e-08 63.2 42 71.4
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.7e-08 63.2 42 71.4
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.7e-08 63.2 42 71.4
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.7e-08 63.2 29 96.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.7e-08 63.2 29 96.6
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.7e-08 63.2 42 71.4
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.7e-08 63.2 42 69.0
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.7e-08 63.2 42 71.4
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.9e-08 62.4 46 67.4
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.9e-08 62.4 46 67.4
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.9e-08 62.4 32 84.4
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 3.8e-08 62.0 42 71.4
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 3.8e-08 62.0 41 70.7
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 5.0e-08 61.6 29 93.1
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 5.0e-08 61.6 29 93.1
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.0e-08 61.6 30 90.0
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 5.0e-08 61.6 64 48.4
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.0e-08 61.6 29 93.1
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.0e-08 61.6 29 93.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 5.0e-08 61.6 29 93.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.0e-08 61.6 29 93.1
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 5.0e-08 61.6 64 50.0
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 6.5e-08 61.2 64 50.0
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 6.5e-08 61.2 64 50.0
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 6.5e-08 61.2 42 71.4
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.5e-08 61.2 42 71.4
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 8.5e-08 60.8 30 86.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 8.5e-08 60.8 30 86.7
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 8.5e-08 60.8 29 89.7
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.1e-07 60.5 30 86.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.1e-07 60.5 41 68.3
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.1e-07 60.5 45 62.2
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.5e-07 60.1 40 72.5
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.5e-07 60.1 42 69.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.5e-07 60.1 42 69.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.9e-07 59.7 64 48.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.9e-07 59.7 64 50.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.5e-07 59.3 64 48.4
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.5e-07 59.3 29 86.2
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 3.2e-07 58.9 54 53.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 3.2e-07 58.9 41 68.3
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.2e-07 58.5 26 96.2
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 4.2e-07 58.5 30 83.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 5.5e-07 58.2 30 80.0
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 7.2e-07 57.8 47 57.4
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 7.2e-07 57.8 30 80.0
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.6e-06 56.6 29 86.2
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.6e-06 56.6 29 82.8
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 2.1e-06 56.2 70 48.6
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.1e-06 56.2 30 80.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 2.1e-06 56.2 30 76.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.1e-06 56.2 29 79.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.7e-06 55.8 45 60.0
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 3.6e-06 55.5 50 56.0
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.7e-06 55.1 29 75.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 4.7e-06 55.1 28 82.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 8.0e-06 54.3 27 81.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 8.0e-06 54.3 30 73.3
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 8.0e-06 54.3 60 50.0
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 8.0e-06 54.3 51 51.0


User provided reference genes

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