Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494861 Rosa chinensis HOM05D004334 ORTHO05D004763 1.0e-28 129.4 67 100.0
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.9e-17 90.1 63 77.8
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 5.1e-12 73.9 48 81.2
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 6.7e-12 73.6 48 81.2
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.7e-12 73.6 48 81.2
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.7e-12 73.6 48 81.2
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 1.9e-11 72.0 48 79.2
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 2.1e-10 68.6 48 72.9
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 3.7e-10 67.8 52 65.4
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 4.8e-10 67.4 48 70.8
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 8.2e-10 66.6 48 70.8
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 1.4e-09 65.9 48 72.9
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 2.4e-09 65.1 48 72.9
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 3.1e-09 64.7 48 70.8
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 6.9e-09 63.5 48 62.5
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 6.9e-09 63.5 48 62.5
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 1.2e-08 62.8 48 68.8
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 1.2e-08 62.8 47 61.7
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 1.2e-08 62.8 48 66.7
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 1.5e-08 62.4 47 66.0
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 1.5e-08 62.4 47 72.3
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 2.0e-08 62.0 48 62.5
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 2.6e-08 61.6 48 68.8
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 2.6e-08 61.6 48 66.7
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 2.6e-08 61.6 52 55.8
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 3.4e-08 61.2 48 58.3
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 3.4e-08 61.2 48 58.3
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 3.4e-08 61.2 48 66.7
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 4.5e-08 60.8 48 66.7
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 4.5e-08 60.8 53 60.4
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 4.5e-08 60.8 53 60.4
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 4.5e-08 60.8 48 66.7
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 4.5e-08 60.8 44 63.6
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 5.8e-08 60.5 48 58.3
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 5.8e-08 60.5 48 58.3
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 5.8e-08 60.5 48 58.3
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 5.8e-08 60.5 45 57.8
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 5.8e-08 60.5 48 64.6
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 5.8e-08 60.5 47 61.7
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 7.6e-08 60.1 63 55.6
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 7.6e-08 60.1 48 64.6
Sabra07G0050800 Salix brachista HOM05D004334 ORTHO05D004763 7.6e-08 60.1 39 69.2
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 7.6e-08 60.1 50 62.0
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 1.0e-07 59.7 38 68.4
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 1.3e-07 59.3 48 64.6
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 1.3e-07 59.3 49 59.2
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 2.2e-07 58.5 45 64.4
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 2.9e-07 58.2 49 63.3
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 3.8e-07 57.8 48 62.5
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 3.8e-07 57.8 48 60.4
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 3.8e-07 57.8 48 60.4
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 3.8e-07 57.8 48 58.3
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 3.8e-07 57.8 49 61.2
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 4.9e-07 57.4 49 61.2
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 4.9e-07 57.4 52 59.6
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.5e-07 57.0 49 67.3
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.5e-07 57.0 49 67.3
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.5e-07 57.0 49 67.3
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 6.5e-07 57.0 45 62.2
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 6.5e-07 57.0 48 62.5
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 8.4e-07 56.6 48 60.4
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 8.4e-07 56.6 59 59.3
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 8.4e-07 56.6 52 57.7
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 1.1e-06 56.2 48 60.4
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 1.1e-06 56.2 46 60.9
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 1.1e-06 56.2 47 59.6
MBI08_g09580_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.1e-06 56.2 41 63.4
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 1.4e-06 55.8 48 62.5
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 1.4e-06 55.8 63 52.4
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 1.9e-06 55.5 40 62.5
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 1.9e-06 55.5 48 58.3
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 1.9e-06 55.5 45 57.8
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 2.5e-06 55.1 49 59.2
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 2.5e-06 55.1 49 65.3
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 3.2e-06 54.7 47 59.6
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 3.2e-06 54.7 48 58.3
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 4.2e-06 54.3 40 62.5
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 4.2e-06 54.3 39 64.1
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 4.2e-06 54.3 49 65.3
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 5.5e-06 53.9 49 57.1
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 5.5e-06 53.9 42 61.9
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 5.5e-06 53.9 49 53.1
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 7.1e-06 53.5 54 50.0
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 7.1e-06 53.5 46 54.3
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 7.1e-06 53.5 46 54.3
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 7.1e-06 53.5 46 54.3
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 9.3e-06 53.1 48 56.2
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 9.3e-06 53.1 45 57.8
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 9.3e-06 53.1 45 57.8
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 9.3e-06 53.1 45 57.8


User provided reference genes

Program Settings