Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 6.1e-35 150.2 73 100.0
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 2.7e-27 124.8 75 81.3
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 4.0e-18 94.4 63 76.2
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 4.0e-18 94.4 63 76.2
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 4.0e-18 94.4 63 76.2
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 4.0e-18 94.4 63 76.2
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 5.2e-18 94.0 63 74.6
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 5.2e-18 94.0 63 73.0
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 7.5e-17 90.1 63 71.4
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 1.3e-16 89.4 63 71.4
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 2.8e-16 88.2 63 69.8
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 4.9e-16 87.4 63 68.3
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 8.3e-16 86.7 63 66.7
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.8e-15 85.5 63 66.7
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 4.1e-15 84.3 63 68.3
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 5.4e-15 84.0 65 64.6
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 7.0e-15 83.6 63 66.7
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 9.2e-15 83.2 72 56.9
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 1.2e-14 82.8 72 56.9
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 1.2e-14 82.8 72 58.3
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 1.2e-14 82.8 72 58.3
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 1.2e-14 82.8 61 65.6
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 1.2e-14 82.8 63 63.5
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.2e-14 82.8 72 59.7
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 1.2e-14 82.8 61 65.6
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 1.2e-14 82.8 63 68.3
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 1.2e-14 82.8 61 65.6
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 1.6e-14 82.4 63 63.5
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 1.6e-14 82.4 61 65.6
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 2.0e-14 82.0 63 63.5
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 2.0e-14 82.0 63 65.1
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 2.0e-14 82.0 63 63.5
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 2.7e-14 81.6 63 63.5
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 2.7e-14 81.6 63 63.5
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 2.7e-14 81.6 63 63.5
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 3.5e-14 81.3 63 63.5
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 3.5e-14 81.3 63 63.5
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 3.5e-14 81.3 63 65.1
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 3.5e-14 81.3 61 67.2
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 3.5e-14 81.3 63 61.9
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 3.5e-14 81.3 63 63.5
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 4.6e-14 80.9 61 65.6
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.6e-14 80.9 72 54.2
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 4.6e-14 80.9 63 61.9
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 5.9e-14 80.5 61 65.6
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 5.9e-14 80.5 61 65.6
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 5.9e-14 80.5 63 61.9
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 5.9e-14 80.5 63 63.5
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 5.9e-14 80.5 61 65.6
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 5.9e-14 80.5 63 61.9
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 7.8e-14 80.1 72 54.2
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 7.8e-14 80.1 63 63.5
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 7.8e-14 80.1 63 61.9
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 7.8e-14 80.1 63 66.7
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 1.0e-13 79.7 63 63.5
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 1.0e-13 79.7 72 54.2
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 1.0e-13 79.7 72 54.2
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 1.0e-13 79.7 63 61.9
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 1.0e-13 79.7 63 63.5
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 1.3e-13 79.3 63 61.9
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 1.3e-13 79.3 63 65.1
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 1.3e-13 79.3 61 63.9
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.7e-13 79.0 72 52.8
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.7e-13 79.0 72 52.8
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 1.7e-13 79.0 63 65.1
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 2.3e-13 78.6 63 60.3
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 2.3e-13 78.6 63 60.3
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 2.3e-13 78.6 63 60.3
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 2.3e-13 78.6 63 60.3
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 2.3e-13 78.6 63 63.5
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 2.3e-13 78.6 72 56.9
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 2.3e-13 78.6 63 63.5
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 2.9e-13 78.2 56 73.2
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 3.9e-13 77.8 63 60.3
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 3.9e-13 77.8 72 52.8
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 3.9e-13 77.8 63 58.7
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 3.9e-13 77.8 63 63.5
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 3.9e-13 77.8 63 61.9
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 5.0e-13 77.4 63 61.9
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 5.0e-13 77.4 63 58.7
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 6.6e-13 77.0 63 60.3
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 6.6e-13 77.0 63 58.7
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 8.6e-13 76.6 63 58.7
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 8.6e-13 76.6 63 61.9
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 8.6e-13 76.6 63 61.9
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 8.6e-13 76.6 65 61.5
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 8.6e-13 76.6 63 60.3
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 1.5e-12 75.9 72 51.4
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 1.5e-12 75.9 72 51.4
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 1.5e-12 75.9 63 60.3
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 1.5e-12 75.9 63 58.7
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 1.5e-12 75.9 63 60.3
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 1.9e-12 75.5 63 58.7
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 1.9e-12 75.5 61 62.3
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 1.9e-12 75.5 63 61.9
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 1.9e-12 75.5 63 58.7
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 2.5e-12 75.1 63 58.7
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 2.5e-12 75.1 63 58.7
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 2.5e-12 75.1 63 58.7
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 2.5e-12 75.1 63 58.7
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 3.3e-12 74.7 64 53.1
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 3.3e-12 74.7 61 59.0
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 3.3e-12 74.7 69 53.6
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 4.3e-12 74.3 63 58.7
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 5.6e-12 73.9 66 53.0
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 5.6e-12 73.9 63 57.1
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 5.6e-12 73.9 63 58.7
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 5.6e-12 73.9 63 58.7
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 7.3e-12 73.6 63 55.6
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 1.2e-11 72.8 63 58.7
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 1.2e-11 72.8 63 57.1
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 1.6e-11 72.4 63 57.1
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 1.6e-11 72.4 63 55.6
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 1.6e-11 72.4 63 55.6
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 1.6e-11 72.4 63 55.6
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 1.6e-11 72.4 63 55.6
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 2.8e-11 71.6 72 47.2
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 2.8e-11 71.6 72 47.2
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 2.8e-11 71.6 72 47.2
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 2.8e-11 71.6 72 47.2
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 2.8e-11 71.6 63 60.3
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 4.7e-11 70.9 63 58.7
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 1.0e-10 69.7 72 45.8
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 1.4e-10 69.3 61 55.7
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 1.4e-10 69.3 61 55.7
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 1.4e-10 69.3 61 57.4
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 1.4e-10 69.3 63 52.4
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 1.8e-10 68.9 63 57.1
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 4.0e-10 67.8 63 52.4
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.0e-10 67.8 61 52.5
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.0e-10 67.8 61 52.5
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 4.0e-10 67.8 61 52.5
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 5.2e-10 67.4 63 57.1
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 5.2e-10 67.4 63 54.0
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 6.8e-10 67.0 67 53.7
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 6.8e-10 67.0 63 55.6
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 8.9e-10 66.6 63 55.6
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 1.2e-09 66.2 61 52.5
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 1.2e-09 66.2 63 50.8
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 1.5e-09 65.9 65 55.4
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 2.0e-09 65.5 63 54.0
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 3.4e-09 64.7 65 50.8
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 7.5e-09 63.5 64 54.7
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 1.7e-08 62.4 64 53.1
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 4.9e-08 60.8 38 73.7
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 8.3e-08 60.1 55 56.4
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 1.4e-07 59.3 64 53.1
RcHm_v2.0_Chr6g0255091 Rosa chinensis HOM05D004476 ORTHO05D002200 2.4e-07 58.5 43 72.1
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 3.2e-07 58.2 66 51.5
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 5.4e-07 57.4 63 44.4


User provided reference genes

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