Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494611 Rosa chinensis HOM05D000435 ORTHO05D050740 1.2e-39 166.0 80 100.0
RcHm_v2.0_Chr5g0059101 Rosa chinensis HOM05D000435 ORTHO05D050740 1.2e-39 166.0 80 100.0
RcHm_v2.0_Chr4g0440941 Rosa chinensis HOM05D000435 ORTHO05D007717 1.5e-10 69.3 46 76.1
FvH4_4g32200 Fragaria vesca HOM05D000435 ORTHO05D007717 5.7e-10 67.4 46 71.7
FAN07G1046 Fragaria x ananassa HOM05D000435 ORTHO05D007717 5.7e-10 67.4 46 71.7
FAN12G3992 Fragaria x ananassa HOM05D000435 ORTHO05D007717 5.7e-10 67.4 46 71.7
ClCG05G022200 Citrullus lanatus HOM05D000435 ORTHO05D007717 1.3e-09 66.2 46 67.4
Prupe.1G322600 Prunus persica HOM05D000435 ORTHO05D007717 1.3e-09 66.2 46 71.7
vmacro00423 Vaccinium macrocarpon HOM05D000435 ORTHO05D007717 1.7e-09 65.9 61 59.0
Medtr1g108340 Medicago truncatula HOM05D000435 ORTHO05D007717 2.2e-09 65.5 46 69.6
Ca_11094_v3 Cicer arietinum L. HOM05D000435 ORTHO05D007717 3.7e-09 64.7 54 59.3
FAN22G2141 Fragaria x ananassa HOM05D000435 ORTHO05D007717 3.7e-09 64.7 37 81.1
TPR.G4902 Trifolium pratense HOM05D000435 ORTHO05D007717 3.7e-09 64.7 46 69.6
arahy.Tifrunner.gnm1.ann1.XA63TZ Arachis hypogaea HOM05D000435 ORTHO05D007717 4.8e-09 64.3 53 62.3
Migut.E00410 Erythranthe guttata HOM05D000435 ORTHO05D007717 4.8e-09 64.3 54 63.0
Rhsim09G0067900 Rhododendron simsii HOM05D000435 ORTHO05D007717 4.8e-09 64.3 37 81.1
VMungo0720G0078 Vigna mungo HOM05D000435 ORTHO05D007717 4.8e-09 64.3 69 46.4
MELO3C012302.2 Cucumis melo HOM05D000435 ORTHO05D007717 6.3e-09 63.9 46 65.2
MD13G1027300 Malus domestica HOM05D000435 ORTHO05D007717 6.3e-09 63.9 46 69.6
Os01g0121700 Oryza sativa ssp. japonica HOM05D000435 ORTHO05D007717 6.3e-09 63.9 52 61.5
arahy.Tifrunner.gnm1.ann1.X7UDDV Arachis hypogaea HOM05D000435 ORTHO05D007717 8.2e-09 63.5 53 62.3
Haze_11029 Corylus avellana HOM05D000435 ORTHO05D007717 8.2e-09 63.5 38 76.3
FAN17G2296 Fragaria x ananassa HOM05D000435 ORTHO05D007717 8.2e-09 63.5 46 69.6
Manes.06G061400 Manihot esculenta HOM05D000435 ORTHO05D007717 8.2e-09 63.5 38 78.9
THA.LOC104823881 Tarenaya hassleriana HOM05D000435 ORTHO05D007717 1.1e-08 63.2 64 53.1
TAR622G0717 Trochodendron aralioides HOM05D000435 ORTHO05D007717 1.1e-08 63.2 38 78.9
GSVIVG01011781001 Vitis vinifera HOM05D000435 ORTHO05D007717 1.1e-08 63.2 38 76.3
Cc11_g08910 Coffea canephora HOM05D000435 ORTHO05D007717 1.4e-08 62.8 54 61.1
Lj5g0001637 Lotus japonicus HOM05D000435 ORTHO05D007717 1.4e-08 62.8 54 57.4
Lj5g0022478 Lotus japonicus HOM05D000435 ORTHO05D007717 1.4e-08 62.8 54 57.4
TAR371G0344 Trochodendron aralioides HOM05D000435 ORTHO05D007717 1.4e-08 62.8 38 78.9
Aqoxy3G03969 Aquilegia oxysepala HOM05D000435 ORTHO05D007717 1.8e-08 62.4 46 71.7
TWI79G1754 Tripterygium wilfordii HOM05D000435 ORTHO05D007717 1.8e-08 62.4 57 56.1
Aa31LG2G8600 Aethionema arabicum HOM05D000435 ORTHO05D007717 2.4e-08 62.0 48 66.7
CAN.G1693.15 Capsicum annuum HOM05D000435 ORTHO05D007717 2.4e-08 62.0 73 53.4
Cpa.g.sc65.118 Carica papaya HOM05D000435 ORTHO05D007717 2.4e-08 62.0 68 51.5
Nn4g24088 Nelumbo nucifera HOM05D000435 ORTHO05D007717 2.4e-08 62.0 38 78.9
Solyc05g008350.3 Solanum lycopersicum HOM05D000435 ORTHO05D007717 2.4e-08 62.0 73 53.4
PGSC0003DMG400030507 Solanum tuberosum HOM05D000435 ORTHO05D007717 2.4e-08 62.0 73 53.4
Dinv13004 Davidia involucrata HOM05D000435 ORTHO05D007717 3.1e-08 61.6 38 81.6
Sopen05g004180 Solanum pennellii HOM05D000435 ORTHO05D007717 3.1e-08 61.6 73 53.4
Psat6g221400 Pisum sativum HOM05D000435 ORTHO05D007717 4.1e-08 61.2 38 73.7
Actinidia31981 Actinidia chinensis HOM05D000435 ORTHO05D007717 5.3e-08 60.8 38 76.3
CSS0010156 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D007717 5.3e-08 60.8 38 76.3
Duzib268G1320 Durio zibethinus HOM05D000435 ORTHO05D007717 5.3e-08 60.8 46 65.2
Phvul.007G036800 Phaseolus vulgaris HOM05D000435 ORTHO05D007717 5.3e-08 60.8 69 44.9
Potri.010G115000 Populus trichocarpa HOM05D000435 ORTHO05D007717 5.3e-08 60.8 38 76.3
Sabra10G0085100 Salix brachista HOM05D000435 ORTHO05D007717 5.3e-08 60.8 38 76.3
CDE06G1254 Ceratophyllum demersum HOM05D000435 ORTHO05D007717 7.0e-08 60.5 60 50.0
COL.COLO4_20458 Corchorus olitorius HOM05D000435 ORTHO05D007717 7.0e-08 60.5 38 73.7
Nitab4.5_0007384g0020 Nicotiana tabacum HOM05D000435 ORTHO05D007717 7.0e-08 60.5 51 62.7
Peaxi162Scf00205g00039 Petunia axillaris HOM05D000435 ORTHO05D007717 7.0e-08 60.5 38 78.9
QL01p002136 Quercus lobata HOM05D000435 ORTHO05D007717 7.0e-08 60.5 46 67.4
Lj6A748T52 Lonicera japonica HOM05D000435 ORTHO05D007717 9.1e-08 60.1 38 76.3
MBI10_g07292_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D007717 9.1e-08 60.1 37 81.1
Nitab4.5_0006134g0030 Nicotiana tabacum HOM05D000435 ORTHO05D007717 9.1e-08 60.1 51 64.7
Sed0013515 Sechium edule HOM05D000435 ORTHO05D007717 9.1e-08 60.1 46 67.4
CDE07G1383 Ceratophyllum demersum HOM05D000435 ORTHO05D007717 1.2e-07 59.7 60 51.7
CsaV3_5G034920 Cucumis sativus L. HOM05D000435 ORTHO05D007717 1.2e-07 59.7 46 65.2
Glyma.10G264900 Glycine max HOM05D000435 ORTHO05D007717 1.2e-07 59.7 38 73.7
Glyma.20G125600 Glycine max HOM05D000435 ORTHO05D007717 1.2e-07 59.7 38 73.7
MBI17_g19033_MAGBIO Magnolia biondii HOM05D014563 ORTHO05D010602 1.2e-07 59.7 34 82.4
Gohir.A01G153500 Gossypium hirsutum HOM05D000435 ORTHO05D007717 1.6e-07 59.3 46 63.0
Gorai.002G180700 Gossypium raimondii HOM05D000435 ORTHO05D007717 1.6e-07 59.3 46 63.0
Zm00001eb334910 Zea mays HOM05D000435 ORTHO05D007717 1.6e-07 59.3 43 67.4
Ciclev10014411m.g Citrus clementina HOM05D000435 ORTHO05D007717 2.0e-07 58.9 79 48.1
PSO782G5050 Papaver somniferum HOM05D000435 ORTHO05D007717 2.0e-07 58.9 38 76.3
Sc11g0004030 Simmondsia chinensis HOM05D000435 ORTHO05D007717 2.0e-07 58.9 68 48.5
AL5G10280 Arabidopsis lyrata HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
AT2G01320 Arabidopsis thaliana HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
BcaB07g30406 Brassica carinata HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
BcaC03g17022 Brassica carinata HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
A02p31890 Brassica napus HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
C02p49340 Brassica napus HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
BolC2t11021H Brassica oleracea HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
BraA02t08199Z Brassica rapa HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
CARHR143840 Cardamine hirsuta HOM05D000435 ORTHO05D007717 2.7e-07 58.5 48 62.5
CiPaw.06G013200 Carya illinoinensis HOM05D000435 ORTHO05D007717 2.7e-07 58.5 38 73.7
ECA234G2068 Erigeron canadensis HOM05D000435 ORTHO05D007717 2.7e-07 58.5 52 57.7
Gohir.D01G099900 Gossypium hirsutum HOM05D000435 ORTHO05D007717 2.7e-07 58.5 46 63.0
Lsat_1_v5_gn_4_15380 Lactuca sativa HOM05D000435 ORTHO05D007717 2.7e-07 58.5 53 58.5
Lalb_Chr02g0145491 Lupinus albus HOM05D000435 ORTHO05D007717 2.7e-07 58.5 49 55.1
Sp2g12770 Schrenkiella parvula HOM05D000435 ORTHO05D007717 2.7e-07 58.5 46 63.0
Thecc.02G278900 Theobroma cacao HOM05D000435 ORTHO05D007717 2.7e-07 58.5 45 64.4
Actinidia33409 Actinidia chinensis HOM05D000435 ORTHO05D007717 3.5e-07 58.2 46 63.0
HanXRQChr12g0377691 Helianthus annuus HOM05D000435 ORTHO05D007717 3.5e-07 58.2 53 60.4
Carub.0005s0029 Capsella rubella HOM05D000435 ORTHO05D007717 4.5e-07 57.8 39 69.2
Eucgr.B02893 Eucalyptus grandis HOM05D000435 ORTHO05D007717 4.5e-07 57.8 38 73.7
Thhalv10000791m.g Eutrema salsugineum HOM05D000435 ORTHO05D007717 4.5e-07 57.8 39 71.8
PGR102G2223 Punica granatum HOM05D000435 ORTHO05D007717 4.5e-07 57.8 37 75.7
DCAR_007282 Daucus carota HOM05D000435 ORTHO05D007717 7.7e-07 57.0 33 78.8
Hma1.2p1_2806F.1_g328840 Hydrangea macrophylla HOM05D000435 ORTHO05D007717 7.7e-07 57.0 38 73.7
HPP92_004829 Vanilla planifolia HOM05D000435 ORTHO05D007717 1.3e-06 56.2 45 62.2
Cfa008583 Carpinus fangiana HOM05D000435 ORTHO05D007717 1.7e-06 55.8 69 46.4
Oeu044341.1 Olea europaea HOM05D000435 ORTHO05D007717 1.7e-06 55.8 38 73.7
MSTRG.13574 Avicennia marina HOM05D000435 ORTHO05D007717 2.2e-06 55.5 49 57.1
Hma1.2p1_2806F.1_g328830 Hydrangea macrophylla HOM05D000435 ORTHO05D007717 2.2e-06 55.5 33 78.8
Atru.chr11.413 Acer truncatum HOM05D000435 ORTHO05D007717 2.9e-06 55.1 54 53.7
AUR62039560 Chenopodium quinoa HOM05D000435 ORTHO05D007717 2.9e-06 55.1 33 75.8
EL10Ac6g14248 Beta vulgaris HOM05D000386 ORTHO05D007717 3.8e-06 54.7 63 50.8
AUR62014133 Chenopodium quinoa HOM05D000435 ORTHO05D007717 3.8e-06 54.7 33 75.8
Hund24996 Selenicereus undatus HOM05D000435 ORTHO05D007717 5.0e-06 54.3 33 72.7


User provided reference genes

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