Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 1.8e-232 808.9 407 100.0
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 5.3e-221 770.8 406 94.3
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 3.3e-215 751.5 395 94.7
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.4e-215 751.1 433 88.2
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 5.9e-212 740.7 396 93.9
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 8.0e-201 703.7 395 88.6
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 1.7e-190 669.5 390 85.4
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 1.2e-188 663.3 382 86.4
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 2.8e-185 652.1 398 81.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 3.6e-185 651.7 396 81.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 8.6e-179 630.6 397 77.6
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 2.5e-178 629.0 396 77.5
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 1.2e-177 626.7 400 78.2
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 2.8e-177 625.5 384 81.0
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 8.0e-177 624.0 397 77.8
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 1.8e-176 622.9 397 77.8
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 6.8e-176 620.9 397 76.8
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 4.4e-175 618.2 397 76.6
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 9.8e-175 617.1 397 75.8
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 1.3e-174 616.7 397 76.8
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 1.3e-174 616.7 396 77.3
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 6.4e-174 614.4 397 75.8
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.4e-173 613.2 396 76.5
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.4e-173 612.5 402 76.4
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.1e-173 611.7 397 75.8
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 7.0e-173 610.9 397 75.6
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 2.7e-172 609.0 395 75.7
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.0e-171 607.1 397 75.8
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.3e-171 605.9 397 75.8
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.3e-171 605.9 397 75.6
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 3.0e-171 605.5 397 75.3
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 3.0e-171 605.5 397 75.8
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 6.6e-171 604.4 392 75.8
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 6.6e-171 604.4 397 75.3
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 1.1e-170 603.6 407 74.0
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 2.5e-170 602.4 406 72.4
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.3e-170 602.1 397 74.8
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 7.3e-170 600.9 404 73.3
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 7.3e-170 600.9 406 73.2
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 1.2e-169 600.1 383 81.2
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 6.2e-169 597.8 397 75.6
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 2.3e-168 595.9 403 73.2
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 4.0e-168 595.1 401 73.1
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 6.8e-168 594.3 401 73.3
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 3.4e-167 592.0 403 73.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 7.5e-167 590.9 397 72.0
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 4.9e-166 588.2 392 75.3
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.9e-166 588.2 396 72.5
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 6.4e-166 587.8 402 73.4
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.4e-165 585.9 396 72.5
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.4e-165 584.7 396 72.2
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 4.6e-164 581.6 375 76.8
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.7e-163 579.7 394 72.3
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.3e-163 579.3 438 68.0
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 2.3e-163 579.3 384 74.5
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 3.0e-163 578.9 398 71.9
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 3.0e-163 578.9 394 71.6
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 3.9e-163 578.6 397 71.3
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.1e-162 577.0 398 71.9
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 2.5e-162 575.9 398 71.9
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 9.5e-162 573.9 378 73.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 3.6e-161 572.0 398 71.4
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 4.7e-161 571.6 399 70.9
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 8.1e-161 570.9 398 70.9
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 8.1e-161 570.9 398 71.1
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 8.1e-161 570.9 398 71.1
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 8.1e-161 570.9 397 71.5
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.8e-160 569.7 398 70.1
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 4.0e-160 568.5 398 69.6
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 5.2e-160 568.2 397 68.8
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 6.8e-160 567.8 398 70.6
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 6.8e-160 567.8 396 71.7
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 8.9e-160 567.4 398 70.6
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 8.9e-160 567.4 398 70.9
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.2e-159 567.0 398 71.6
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 4.4e-159 565.1 394 72.3
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 4.4e-159 565.1 380 72.9
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.2e-158 562.8 386 70.5
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 3.8e-158 562.0 400 69.0
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 4.9e-158 561.6 407 68.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 8.4e-158 560.8 388 73.2
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.2e-157 558.9 395 70.6
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 3.2e-157 558.9 395 70.6
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 3.2e-157 558.9 397 69.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 5.4e-157 558.1 396 69.9
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 7.1e-157 557.8 407 69.5
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 4.6e-156 555.1 395 66.8
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 6.0e-156 554.7 396 69.2
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 6.0e-156 554.7 399 70.4
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 7.8e-156 554.3 401 69.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.6e-153 546.6 375 71.5
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 8.1e-153 544.3 397 67.8
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 8.1e-153 544.3 397 67.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.1e-152 543.9 412 66.3
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.8e-152 543.1 396 66.9
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.2e-151 540.4 397 68.3
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.5e-151 540.0 397 69.0
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 4.9e-150 535.0 397 66.2
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 6.4e-150 534.6 384 71.1
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 1.4e-149 533.5 396 66.7
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 1.9e-149 533.1 402 64.4
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.4e-149 531.6 385 68.8
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.4e-149 531.6 385 68.8
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 6.0e-148 528.1 379 69.4
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 1.0e-147 527.3 351 71.8
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 9.6e-146 520.8 396 66.4
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 1.7e-142 510.0 399 65.7
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 2.4e-141 506.1 417 64.0
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 5.6e-138 495.0 390 64.4
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 9.9e-135 484.2 349 68.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.2e-132 477.2 383 63.2
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.6e-132 476.9 383 62.9
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 4.8e-129 465.3 380 63.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 4.8e-129 465.3 395 58.0
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 7.6e-127 458.0 401 58.4
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 3.1e-112 409.5 404 51.7
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 5.9e-111 405.2 245 81.6
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 7.9e-108 394.8 406 48.8
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.3e-107 393.3 406 48.5
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 2.9e-102 376.3 268 70.1
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.1e-98 364.4 404 47.0
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 3.5e-95 352.8 265 69.1
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 1.3e-94 350.9 320 59.1
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.7e-92 343.2 279 59.9
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.6e-87 327.4 406 42.1
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 4.5e-87 325.9 292 55.5
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 3.6e-84 316.2 389 41.9
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.2e-81 307.0 205 70.7
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 2.7e-79 300.1 475 36.6
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.5e-77 294.3 163 93.3
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.4e-64 250.4 180 68.3
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 4.7e-60 236.1 163 74.8
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.4e-59 234.6 210 60.0
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 9.8e-58 228.4 205 59.5
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 2.4e-56 223.8 210 61.4
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 1.3e-54 218.0 373 38.6
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-39 168.3 200 49.5
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 3.5e-39 166.8 120 66.7
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 4.6e-39 166.4 255 42.4
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.6e-26 124.0 89 68.5
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.8e-22 111.3 239 35.6
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.8e-22 111.3 239 35.6
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 2.3e-22 110.9 100 51.0
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 3.7e-20 103.6 86 61.6
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 1.4e-16 91.7 66 68.2
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.8e-12 76.6 47 83.0
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 6.2e-12 76.3 46 73.9
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.3e-11 73.2 65 53.8


User provided reference genes

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