Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494051 Rosa chinensis HOM05D016257 ORTHO05D000002 2.7e-63 245.0 110 100.0
RcHm_v2.0_Chr3g0451501 Rosa chinensis HOM05D016257 ORTHO05D000002 5.2e-30 134.4 88 63.6
RcHm_v2.0_Chr5g0021481 Rosa chinensis HOM05D000004 ORTHO05D000002 4.4e-29 131.3 88 62.5
FvH4_3g30933 Fragaria vesca HOM05D000004 ORTHO05D000002 9.2e-27 123.6 91 54.9
FvH4_4g06573 Fragaria vesca HOM05D000004 ORTHO05D000002 1.2e-26 123.2 99 50.5
RcHm_v2.0_Chr4g0397431 Rosa chinensis HOM05D000004 ORTHO05D000002 2.1e-26 122.5 92 50.0
FvH4_1g14571 Fragaria vesca HOM05D000004 ORTHO05D000002 1.3e-25 119.8 88 54.5
FvH4_4g21031 Fragaria vesca HOM05D017896 ORTHO05D025375 1.7e-25 119.4 109 45.0
FvH4_2g19792 Fragaria vesca HOM05D000004 ORTHO05D000002 2.3e-25 119.0 92 50.0
RcHm_v2.0_Chr6g0286171 Rosa chinensis HOM05D000004 ORTHO05D000002 5.1e-25 117.9 86 53.5
RcHm_v2.0_Chr5g0078031 Rosa chinensis HOM05D000004 ORTHO05D000002 4.3e-24 114.8 89 50.6
FvH4_6g20641 Fragaria vesca HOM05D000004 ORTHO05D000002 1.4e-22 109.8 82 50.0
FvH4_3g30422 Fragaria vesca HOM05D000004 ORTHO05D000002 7.6e-21 104.0 79 50.6
RcHm_v2.0_Chr4g0414861 Rosa chinensis HOM05D000004 ORTHO05D000002 1.9e-19 99.4 89 47.2
FvH4_5g20942 Fragaria vesca HOM05D016257 ORTHO05D022627 9.6e-16 87.0 86 43.0
Hma1.2p1_1220F.1_g268080 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.2e-10 70.1 85 31.8
Hma1.2p1_0055F.1_g031400 Hydrangea macrophylla HOM05D000181 ORTHO05D004115 2.7e-10 68.9 78 37.2
CiPaw.03G095100 Carya illinoinensis HOM05D000004 ORTHO05D000002 3.9e-09 65.1 81 33.3
Hma1.2p1_0812F.1_g222280 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 6.6e-09 64.3 88 31.8
HanXRQChr06g0175231 Helianthus annuus HOM05D000004 ORTHO05D000002 8.7e-09 63.9 92 35.9
TAR643G0001 Trochodendron aralioides HOM05D000004 ORTHO05D000002 1.5e-08 63.2 76 35.5
SHI44582 Sapria himalayana HOM05D000004 ORTHO05D000002 3.3e-08 62.0 98 32.7
Sp7g21440 Schrenkiella parvula HOM05D000004 ORTHO05D000002 4.3e-08 61.6 78 33.3
SHI48351 Sapria himalayana HOM05D000004 ORTHO05D000002 9.6e-08 60.5 80 33.8
Sopen06g014540 Solanum pennellii HOM05D000004 ORTHO05D000002 9.6e-08 60.5 110 32.7
SHI24712 Sapria himalayana HOM05D000004 ORTHO05D000002 1.3e-07 60.1 106 29.2
BcaB05g24306 Brassica carinata HOM05D000004 ORTHO05D000002 1.6e-07 59.7 81 35.8
BolC4t24363H Brassica oleracea HOM05D000050 ORTHO05D000771 1.6e-07 59.7 80 33.8
QL05p032758 Quercus lobata HOM05D000004 ORTHO05D000002 1.6e-07 59.7 77 37.7
SpUn0005_0210 Schrenkiella parvula HOM05D000004 ORTHO05D000002 1.6e-07 59.7 81 32.1
SpUn0035_0010 Schrenkiella parvula HOM05D000004 ORTHO05D000002 1.6e-07 59.7 81 32.1
TWI31G1488 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.1e-07 59.3 74 37.8
TWI34G0287 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.1e-07 59.3 74 37.8
TWI38G0029 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.1e-07 59.3 74 37.8
TWI81G0785 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.1e-07 59.3 74 37.8
TWI81G0970 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.1e-07 59.3 73 35.6
Sopen07g005380 Solanum pennellii HOM05D000004 ORTHO05D000048 4.8e-07 58.2 78 38.5
ECA240G3730 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.1e-07 57.4 73 34.2
CiPaw.09G207300 Carya illinoinensis HOM05D000004 ORTHO05D000002 1.1e-06 57.0 77 32.5
ECA238G4401 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-06 57.0 87 29.9
PSO541G3547 Papaver somniferum HOM05D000004 ORTHO05D000002 1.1e-06 57.0 74 40.5
QL01p053992 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-06 57.0 92 31.5
QL04p085052 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-06 57.0 92 31.5
QL08p043961 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-06 57.0 92 31.5
Oeu015199.1 Olea europaea HOM05D000004 ORTHO05D000002 1.4e-06 56.6 77 32.5
PSO210G6199 Papaver somniferum HOM05D000004 ORTHO05D000002 1.4e-06 56.6 72 33.3
SHI16403 Sapria himalayana HOM05D000004 ORTHO05D000002 1.4e-06 56.6 76 35.5
Sopen04g023950 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-06 56.6 78 37.2
TPR.G7895 Trifolium pratense HOM05D000004 ORTHO05D000048 1.4e-06 56.6 90 28.9
ECA240G2607 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.8e-06 56.2 73 34.2
Lalb_Chr06g0168691 Lupinus albus HOM05D000004 ORTHO05D000002 1.8e-06 56.2 93 28.0
PSO675G6766 Papaver somniferum HOM05D000004 ORTHO05D000002 1.8e-06 56.2 71 36.6
COL.COLO4_14043 Corchorus olitorius HOM05D000004 ORTHO05D000002 2.4e-06 55.8 85 34.1
Thhalv10012141m.g Eutrema salsugineum HOM05D000004 ORTHO05D000002 2.4e-06 55.8 88 28.4
Manes.03G138751 Manihot esculenta HOM05D000004 ORTHO05D000002 2.4e-06 55.8 98 27.6
PSO724G0511 Papaver somniferum HOM05D000004 ORTHO05D000002 2.4e-06 55.8 65 38.5
TWI39G0003 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.4e-06 55.8 77 37.7
VMungo1080G1264 Vigna mungo HOM05D000004 ORTHO05D013858 2.4e-06 55.8 92 28.3
Atru.chr6.164 Acer truncatum HOM05D000544 ORTHO05D000002 3.1e-06 55.5 91 33.0
Ah.02g124620 Amaranthus hybridus HOM05D013246 ORTHO05D000002 3.1e-06 55.5 83 33.7
COL.COLO4_04208 Corchorus olitorius HOM05D037185 ORTHO05D000002 3.1e-06 55.5 77 31.2
ECA246G1501 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.1e-06 55.5 70 32.9
Nn2g14946 Nelumbo nucifera HOM05D067151 ORTHO05D000002 3.1e-06 55.5 79 30.4
PSO675G1874 Papaver somniferum HOM05D000004 ORTHO05D000002 3.1e-06 55.5 83 28.9
BcaB07g33616 Brassica carinata HOM05D000004 ORTHO05D000002 4.0e-06 55.1 97 29.9
Cpa.g.sc4.25 Carica papaya HOM05D000004 ORTHO05D000002 4.0e-06 55.1 80 30.0
Nn2g14750 Nelumbo nucifera HOM05D000004 ORTHO05D000002 4.0e-06 55.1 77 35.1
Psat0s1551g0120 Pisum sativum HOM05D000004 ORTHO05D000002 4.0e-06 55.1 93 26.9
Psat3g197960 Pisum sativum HOM05D000004 ORTHO05D000002 4.0e-06 55.1 93 26.9
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 5.3e-06 54.7 93 30.1
PSO170G3746 Papaver somniferum HOM05D000004 ORTHO05D000002 5.3e-06 54.7 92 30.4
Atru.chr11.883 Acer truncatum HOM05D000004 ORTHO05D000002 6.9e-06 54.3 96 32.3
CANSAT78G0406 Cannabis sativa HOM05D000004 ORTHO05D000002 6.9e-06 54.3 86 33.7
TWI09G0741 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 6.9e-06 54.3 110 28.2
Atru.chr4.870 Acer truncatum HOM05D000004 ORTHO05D000002 9.0e-06 53.9 75 38.7
COL.COLO4_25153 Corchorus olitorius HOM05D030667 ORTHO05D000002 9.0e-06 53.9 93 29.0
Nn5g27771 Nelumbo nucifera HOM05D000004 ORTHO05D000002 9.0e-06 53.9 86 27.9
Sopen01g010380 Solanum pennellii HOM05D000004 ORTHO05D000002 9.0e-06 53.9 77 36.4


User provided reference genes

Program Settings