Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 4.6e-121 438.0 230 100.0
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.3e-112 409.1 235 94.5
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.1e-90 337.0 243 80.7
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.5e-90 335.9 243 80.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.3e-88 329.3 253 77.9
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 3.0e-88 328.9 243 79.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.8e-88 327.4 243 79.0
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.0e-87 326.2 260 75.4
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 1.1e-50 204.1 227 60.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 9.5e-50 201.1 230 57.8
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 7.5e-39 164.9 251 48.2
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 8.1e-33 144.8 261 45.2
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 3.4e-31 139.4 236 44.9
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 9.9e-31 137.9 235 44.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 8.4e-30 134.8 228 46.9
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 4.2e-29 132.5 233 43.8
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 2.3e-27 126.7 179 49.7
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.1e-26 124.4 219 43.8
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.5e-26 124.0 220 44.5
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.1e-25 120.2 230 43.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.8e-25 119.0 231 40.7
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 6.2e-25 118.6 221 43.4
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 1.1e-24 117.9 228 42.5
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.2e-23 114.4 229 42.8
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 1.7e-22 110.5 217 41.5
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 8.4e-22 108.2 218 42.2
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.1e-21 107.8 208 43.8
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 1.9e-21 107.1 202 43.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 4.2e-21 105.9 223 42.2
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 3.0e-19 99.8 223 39.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 3.9e-19 99.4 224 37.1
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.5e-18 97.4 214 40.2
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 2.5e-18 96.7 224 38.8
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.5e-18 96.7 241 36.5
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 2.5e-18 96.7 241 36.5
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.3e-17 94.4 235 36.2
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 6.2e-17 92.0 226 38.5
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 6.9e-16 88.6 213 37.6
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 9.0e-16 88.2 240 33.3
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 3.4e-15 86.3 192 39.1
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 3.4e-15 86.3 192 39.1
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 7.6e-15 85.1 225 37.8
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 7.6e-15 85.1 253 36.0
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 2.2e-14 83.6 227 36.1
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 9.3e-13 78.2 237 35.9
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 9.3e-13 78.2 201 37.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.6e-12 77.4 230 36.5
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 7.9e-12 75.1 222 34.2
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.3e-11 74.3 200 35.0
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.1e-10 71.2 209 36.4
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.9e-10 70.5 235 33.2
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 5.6e-10 68.9 222 34.7
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 5.6e-10 68.9 165 41.8
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.3e-09 67.8 235 33.2
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.8e-09 66.6 220 33.6
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 3.7e-09 66.2 180 35.0
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.7e-09 66.2 226 38.1
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.4e-08 64.3 228 29.8
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 9.0e-08 61.6 220 34.1
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 9.0e-08 61.6 154 37.0
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.6e-07 60.1 210 30.0
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.6e-07 60.1 220 29.5
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.6e-07 60.1 181 33.1
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.6e-07 60.1 145 35.2
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 5.8e-07 58.9 213 33.8


User provided reference genes

Program Settings