Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 6.5e-131 470.7 234 100.0
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 3.2e-130 468.4 234 99.6
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 3.4e-127 458.4 234 97.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.6e-121 439.5 234 94.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 6.1e-121 437.6 234 93.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.8e-120 436.0 234 93.6
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.8e-119 430.3 249 88.4
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.7e-118 428.3 249 87.6
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 5.0e-107 391.3 234 81.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.2e-105 386.7 234 80.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 4.0e-104 381.7 234 80.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.0e-103 379.4 234 78.2
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 3.4e-103 378.6 228 79.4
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 3.4e-103 378.6 228 79.4
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 9.8e-103 377.1 234 77.8
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.7e-102 376.3 234 79.5
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.7e-102 376.3 234 77.4
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 4.9e-102 374.8 228 78.9
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 6.4e-102 374.4 228 80.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 6.4e-102 374.4 234 78.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 8.3e-102 374.0 223 80.3
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.3e-102 374.0 234 76.9
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.4e-101 373.2 228 79.4
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.4e-101 373.2 228 79.4
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.9e-101 372.9 236 80.5
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.9e-101 372.9 236 80.5
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.4e-101 372.5 234 79.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.4e-101 372.5 234 77.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 4.1e-101 371.7 228 79.4
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 7.1e-101 370.9 234 79.1
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 9.2e-101 370.5 234 79.1
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 9.2e-101 370.5 228 80.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 4.6e-100 368.2 236 80.9
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.0e-99 367.1 234 75.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.3e-99 366.7 228 78.5
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 3.0e-99 365.5 228 78.5
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.0e-99 365.5 234 76.1
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 5.1e-99 364.8 235 75.3
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.3e-98 362.1 250 74.4
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 4.3e-98 361.7 234 75.2
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.6e-98 361.3 228 78.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 5.6e-98 361.3 228 78.1
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.6e-98 361.3 235 74.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 5.6e-98 361.3 228 75.4
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 7.3e-98 360.9 223 78.9
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 9.5e-98 360.5 235 76.2
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.2e-97 360.1 256 70.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.2e-97 360.1 234 73.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.6e-97 359.8 228 75.9
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-97 359.8 228 76.8
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.8e-97 359.0 234 75.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.8e-97 359.0 237 75.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.6e-97 358.6 221 77.8
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 6.2e-97 357.8 234 74.8
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 6.2e-97 357.8 230 74.3
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 6.2e-97 357.8 235 77.0
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.4e-96 356.7 234 74.4
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.8e-96 356.3 230 73.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.8e-96 356.3 233 73.4
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 3.1e-96 355.5 232 75.4
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.0e-96 355.1 234 74.8
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.0e-95 352.8 219 77.6
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 4.4e-95 351.7 228 75.9
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.7e-94 349.7 234 74.4
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.2e-94 349.4 189 93.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.2e-94 349.4 221 75.1
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.9e-94 349.0 234 72.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 3.8e-94 348.6 234 73.9
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 6.4e-94 347.8 222 76.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.4e-94 347.4 234 73.9
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.9e-93 346.3 232 74.1
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.1e-93 345.1 234 73.9
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.4e-93 344.7 234 73.5
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.6e-92 343.2 230 73.5
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-92 343.2 234 73.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.3e-91 340.1 235 71.5
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.3e-91 340.1 235 71.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.3e-91 340.1 219 72.1
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.1e-91 338.2 236 70.8
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 8.6e-91 337.4 233 70.4
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 8.6e-91 337.4 216 75.0
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.1e-90 337.0 219 74.0
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.1e-90 337.0 235 71.9
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.9e-90 336.3 214 76.6
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 5.6e-90 334.7 234 71.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.1e-89 332.8 237 70.5
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.8e-89 332.4 236 70.3
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 6.2e-89 331.3 236 69.5
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.2e-89 331.3 233 68.7
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 6.2e-89 331.3 232 69.4
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.4e-88 330.1 219 71.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.4e-88 330.1 230 70.9
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.8e-88 329.7 235 69.4
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 2.4e-88 329.3 236 69.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.1e-88 328.9 232 69.4
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.1e-88 328.9 228 72.4
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.1e-88 328.9 236 69.9
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 3.1e-88 328.9 234 70.5
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 5.2e-88 328.2 241 68.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.2e-88 328.2 234 71.4
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 8.9e-88 327.4 219 69.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 8.9e-88 327.4 234 69.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.5e-87 326.6 219 69.9
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.0e-87 326.2 218 71.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.0e-87 326.2 218 71.1
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.6e-87 325.9 234 68.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 2.6e-87 325.9 234 68.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.6e-87 325.9 235 68.5
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.6e-87 325.9 227 69.2
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 3.4e-87 325.5 229 70.7
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 5.8e-87 324.7 218 71.1
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 5.8e-87 324.7 229 69.9
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.8e-87 324.7 235 68.1
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-86 323.2 228 71.5
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.9e-86 322.4 268 63.4
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 6.4e-86 321.2 227 70.0
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.4e-86 321.2 233 67.4
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.2e-85 318.9 227 68.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.6e-84 315.1 234 68.4
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 8.7e-83 310.8 242 65.3
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.6e-81 306.6 237 66.7
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 2.4e-80 302.8 238 64.7
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 7.6e-79 297.7 186 76.9
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.4e-77 293.5 219 69.4
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 6.7e-75 284.6 237 64.1
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.3e-74 282.3 180 75.6
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 5.8e-71 271.6 229 62.4
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.1e-68 263.1 212 60.8
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.5e-68 262.3 234 59.0
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.7e-67 257.7 162 77.2
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.1e-65 253.1 203 65.0
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 6.2e-65 251.5 227 53.3
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 5.8e-63 245.0 159 73.0
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 8.4e-62 241.1 145 84.1
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.0e-59 234.2 157 70.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 3.7e-57 225.7 190 63.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.9e-54 216.1 225 51.1
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.9e-53 213.4 215 50.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 6.1e-52 208.4 212 51.9
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.0e-51 206.1 212 51.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.8e-49 199.5 186 56.5
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.0e-47 193.4 120 74.2
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.9e-46 189.5 184 56.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-43 181.0 134 61.9
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-40 170.6 158 59.5
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.8e-40 170.2 203 43.8
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.1e-36 156.8 99 70.7
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.9e-35 152.5 220 45.9
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 4.4e-34 149.1 94 79.8
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 9.1e-32 141.4 152 48.0
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.6e-31 140.6 221 40.3
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.2e-29 131.7 76 89.5
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.2e-28 131.0 75 90.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-28 130.2 75 90.7
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.7e-28 129.8 76 88.2
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 4.0e-27 125.9 104 63.5
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.2e-25 118.2 88 70.5
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 3.8e-22 109.4 203 32.0
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-19 101.3 90 54.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 5.2e-19 99.0 74 68.9
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.4e-18 96.3 108 46.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.7e-17 92.8 59 78.0
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.3e-17 91.7 67 67.2
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.1e-16 89.7 70 70.0
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 1.3e-14 84.3 243 29.6
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 1.0e-11 74.7 142 33.1
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 4.0e-11 72.8 52 73.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 8.8e-11 71.6 53 73.6
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 8.3e-09 65.1 39 79.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.8e-08 63.9 55 65.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.1e-08 63.2 39 69.2
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.4e-08 62.4 54 64.8


User provided reference genes

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