Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.0e-163 580.1 320 100.0
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 4.3e-141 505.0 320 89.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.8e-139 499.6 320 85.3
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.4e-136 488.0 320 87.2
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 7.8e-127 457.6 322 80.4
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.8e-123 446.4 322 78.3
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.4e-123 446.0 265 94.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 6.0e-119 431.4 307 78.5
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.3e-116 423.7 322 76.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.1e-116 422.9 265 86.4
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-115 420.6 295 78.6
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 3.1e-115 419.1 295 79.3
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 6.9e-115 417.9 320 73.1
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.7e-113 413.3 287 78.7
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.1e-112 410.6 295 73.9
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.4e-112 410.2 322 74.5
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 3.2e-112 409.1 322 72.7
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 3.2e-112 409.1 324 75.9
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 9.3e-112 407.5 272 77.2
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 2.7e-111 406.0 312 69.9
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 4.6e-111 405.2 270 85.6
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 3.9e-110 402.1 319 72.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 8.7e-110 401.0 302 70.2
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 8.7e-110 401.0 302 70.2
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.1e-109 400.6 327 74.6
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.5e-109 400.2 330 71.2
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.9e-109 399.8 327 67.0
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.6e-109 398.3 269 79.9
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.3e-108 397.1 331 72.8
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.6e-108 396.7 320 66.9
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.1e-108 396.4 307 67.8
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 2.8e-108 396.0 312 75.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 6.2e-108 394.8 272 78.7
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 1.1e-107 394.0 268 76.1
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.1e-107 394.0 329 73.3
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.1e-107 394.0 322 66.5
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.8e-107 393.3 320 65.9
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 6.9e-107 391.3 273 74.7
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 6.9e-107 391.3 265 81.5
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 6.9e-107 391.3 329 73.6
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 9.0e-107 391.0 320 65.9
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.5e-106 390.2 307 68.4
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.6e-106 389.4 266 75.6
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 3.4e-106 389.0 268 75.4
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.4e-106 389.0 265 81.1
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 5.8e-106 388.3 320 65.9
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 7.6e-106 387.9 267 77.2
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.0e-105 387.5 268 75.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 1.3e-105 387.1 299 71.9
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 3.8e-105 385.6 276 73.2
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 3.8e-105 385.6 268 73.5
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.8e-105 385.6 269 75.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 6.5e-105 384.8 266 79.7
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 6.5e-105 384.8 270 74.4
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 8.4e-105 384.4 325 68.9
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 8.4e-105 384.4 261 77.4
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 8.4e-105 384.4 324 70.1
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.1e-104 384.0 328 65.5
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.4e-104 383.6 322 70.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.9e-104 383.3 268 76.1
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 7.1e-104 381.3 282 73.0
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.2e-103 380.6 320 65.6
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.2e-103 380.6 287 73.2
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 2.7e-103 379.4 298 67.4
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 7.9e-103 377.9 288 72.6
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.9e-101 373.2 275 73.8
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.9e-101 373.2 319 68.0
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 3.3e-101 372.5 292 68.5
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 3.3e-101 372.5 273 73.6
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 9.6e-101 370.9 234 79.9
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 6.3e-100 368.2 321 69.2
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.1e-99 367.5 267 73.8
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.5e-98 363.6 270 74.4
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.5e-98 363.6 270 74.4
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 4.5e-98 362.1 269 74.0
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 2.9e-97 359.4 269 69.1
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 2.9e-97 359.4 324 61.7
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.4e-96 357.1 276 72.1
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 7.2e-96 354.8 321 63.9
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.2e-96 354.8 326 63.8
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 9.3e-96 354.4 281 70.5
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.1e-95 353.2 323 63.8
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.1e-95 353.2 277 70.8
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 2.7e-95 352.8 326 63.2
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 4.6e-95 352.1 307 63.2
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 7.9e-95 351.3 321 61.1
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.0e-94 350.9 323 63.8
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 3.0e-94 349.4 235 77.9
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 2.5e-93 346.3 287 64.5
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 2.4e-91 339.7 278 69.4
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 2.4e-91 339.7 306 60.8
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.0e-89 334.3 278 68.3
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.9e-89 332.8 288 66.7
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.9e-88 330.1 258 70.9
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.6e-87 325.9 270 66.3
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 2.3e-86 323.2 272 65.4
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 3.9e-86 322.4 300 62.3
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.7e-84 317.0 255 68.6
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 8.2e-84 314.7 265 67.5
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 4.1e-83 312.4 235 73.2
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 1.4e-80 303.9 269 71.0
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 5.5e-80 302.0 236 67.4
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 3.7e-76 289.3 306 57.8
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 4.7e-71 272.3 257 60.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 5.2e-70 268.9 183 77.6
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 5.2e-70 268.9 259 56.8
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 4.4e-69 265.8 237 64.1
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 7.2e-64 248.4 180 70.0
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.8e-62 243.8 231 63.2
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 4.8e-60 235.7 172 71.5
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 3.1e-59 233.0 270 51.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.6e-58 230.7 213 60.6
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.5e-58 229.2 264 61.0
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 1.1e-56 224.6 287 52.6
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 5.9e-50 202.2 179 67.0
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 3.1e-38 163.3 150 57.3
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 6.6e-25 119.0 116 56.0
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.9e-24 117.5 81 80.2
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 3.6e-15 86.7 84 58.3
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.1e-14 85.1 122 46.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-13 81.6 122 46.7
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.3e-07 61.6 66 51.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 4.8e-07 59.7 66 51.5
CDE06G0370 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 6.9e-06 55.8 71 45.1
SMO343G0062 Selaginella moellendorffii HOM05D067698 ORTHO05D050854 9.0e-06 55.5 99 33.3


User provided reference genes

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