Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 0.0e+00 1293.9 669 100.0
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 0.0e+00 1207.6 669 92.8
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 0.0e+00 1114.4 669 87.4
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 0.0e+00 1097.4 670 83.4
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 0.0e+00 1084.3 646 85.1
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.0e-306 1054.3 579 92.9
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.9e-292 1008.8 665 77.1
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-289 999.6 669 80.4
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 2.4e-287 991.9 671 74.7
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 8.0e-283 976.9 643 76.4
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 3.7e-280 968.0 670 73.3
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 3.7e-280 968.0 671 73.5
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 3.2e-279 964.9 671 72.7
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 5.4e-279 964.1 671 73.3
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 7.0e-279 963.8 648 74.1
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 7.0e-279 963.8 664 72.4
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.7e-277 959.1 671 72.4
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 1.2e-275 953.0 669 72.9
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 2.1e-275 952.2 673 70.7
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 6.2e-275 950.7 700 68.6
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.2e-273 946.4 655 71.0
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.1e-271 939.9 662 71.0
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 9.2e-271 936.8 670 70.9
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 4.6e-270 934.5 669 69.8
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 6.0e-270 934.1 671 69.7
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.0e-269 933.3 671 69.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 5.1e-269 931.0 667 69.3
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 6.6e-269 930.6 670 69.4
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 5.6e-268 927.5 650 70.5
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.2e-266 921.0 671 69.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 5.2e-266 921.0 665 68.4
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.2e-265 919.8 660 70.0
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 5.8e-265 917.5 649 68.9
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.7e-264 916.0 653 71.4
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.7e-264 914.8 673 67.9
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 6.4e-264 914.1 669 68.0
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 4.6e-262 907.9 671 67.8
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.0e-261 906.7 643 69.8
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.0e-261 906.7 662 68.1
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 3.0e-261 905.2 690 66.8
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 6.6e-261 904.0 676 67.3
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 8.6e-261 903.7 675 67.7
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.5e-260 902.9 664 68.2
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 2.4e-258 895.6 671 67.1
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 4.0e-258 894.8 632 71.5
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.5e-257 892.9 669 68.0
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 9.9e-257 890.2 673 67.3
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.3e-253 879.8 676 66.3
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 6.6e-253 877.5 687 65.4
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.1e-251 872.5 665 65.6
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.8e-251 872.1 736 62.4
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 9.0e-250 867.1 660 66.4
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 3.4e-249 865.1 660 66.2
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 5.8e-249 864.4 671 64.1
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 3.8e-248 861.7 671 64.1
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 6.4e-248 860.9 674 64.1
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 1.9e-247 859.4 663 64.3
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.9e-247 859.4 663 63.8
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 3.2e-247 858.6 673 64.8
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 2.1e-246 855.9 669 64.6
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 2.7e-246 855.5 723 61.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 3.5e-246 855.1 581 72.3
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.0e-245 853.6 670 65.1
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.3e-245 853.2 670 63.1
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.0e-245 852.0 649 66.3
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 6.6e-245 850.9 663 63.5
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 3.6e-243 845.1 675 62.4
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 6.2e-243 844.3 696 61.8
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.4e-242 843.2 674 62.8
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 2.2e-240 835.9 725 59.4
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 2.2e-240 835.9 665 65.0
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 2.9e-240 835.5 666 62.9
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 8.4e-240 833.9 672 62.4
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 5.5e-239 831.2 634 63.7
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 4.3e-236 821.6 698 61.9
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 9.6e-236 820.5 697 59.5
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 3.1e-234 815.5 669 61.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 7.6e-233 810.8 744 56.7
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 3.3e-228 795.4 671 61.3
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 6.3e-227 791.2 646 63.3
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 3.4e-225 785.4 572 68.7
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 1.3e-224 783.5 673 60.3
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 2.2e-224 782.7 649 61.8
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.8e-224 781.9 662 60.7
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 6.5e-224 781.2 554 70.9
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.4e-223 780.0 708 58.2
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 6.1e-222 774.6 572 67.7
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 5.7e-220 768.1 638 61.6
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.3e-216 756.9 650 58.9
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.2e-216 756.1 697 57.1
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 6.5e-216 754.6 665 57.6
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.4e-215 753.4 649 58.9
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 6.1e-214 748.0 665 59.4
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 5.3e-210 734.9 666 57.8
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.8e-197 693.3 514 68.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.1e-194 684.1 624 57.5
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 4.7e-190 668.7 675 53.9
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.4e-181 640.6 492 65.9
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.5e-177 625.5 594 55.9
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 3.3e-167 592.8 665 48.0
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 2.0e-161 573.5 649 48.2
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.3e-144 516.9 352 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.4e-141 507.7 682 43.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 1.5e-135 487.6 309 78.6
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.6e-124 450.3 583 46.7
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 5.7e-103 379.4 704 37.8
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.8e-88 331.3 355 49.9
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 2.6e-87 327.4 307 54.7
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.2e-73 282.0 650 31.7
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.1e-69 268.9 239 59.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-68 265.4 338 45.3
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.1e-50 205.7 183 56.8
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.0e-48 197.2 324 37.0
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 6.4e-38 163.3 315 33.3
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 2.4e-37 161.4 734 26.2
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.2e-31 142.5 113 62.8
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 9.9e-31 139.4 192 44.3
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.6e-25 122.1 127 51.2
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 2.1e-25 121.7 116 57.8
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.9e-21 108.6 94 55.3
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 5.1e-19 100.5 102 51.0
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.3e-17 95.9 50 88.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.3e-17 95.9 78 56.4
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.1e-17 95.1 50 88.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.2e-17 93.6 50 86.0
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 1.1e-16 92.8 72 61.1
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.0e-16 90.9 50 86.0
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-14 85.1 52 67.3
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.4e-13 81.6 62 56.5
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.4e-13 81.6 62 56.5
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.4e-13 81.6 65 53.8
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.5e-10 72.4 42 85.7
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 4.3e-10 70.9 45 68.9
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 9.6e-10 69.7 45 68.9
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-08 65.1 38 76.3
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 9.9e-07 59.7 36 69.4


User provided reference genes

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