Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 3.0e-48 194.9 102 100.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.1e-47 193.0 102 99.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.7e-46 189.1 102 97.1
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.7e-46 189.1 102 97.1
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.7e-46 189.1 102 97.1
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.8e-46 187.6 102 96.1
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 9.1e-37 156.8 101 76.2
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 5.9e-36 154.1 101 73.3
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 7.7e-36 153.7 101 74.3
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 7.7e-36 153.7 101 75.2
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.0e-35 153.3 100 76.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 1.0e-35 153.3 101 76.2
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.3e-35 152.9 101 74.3
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 2.2e-35 152.1 101 74.3
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.2e-35 152.1 101 72.3
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 2.2e-35 152.1 100 75.0
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 2.2e-35 152.1 101 71.3
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 2.9e-35 151.8 99 75.8
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 3.8e-35 151.4 101 72.3
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 5.0e-35 151.0 101 75.2
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 5.0e-35 151.0 101 73.3
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 5.0e-35 151.0 98 77.6
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 5.0e-35 151.0 101 76.2
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 6.5e-35 150.6 101 72.3
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 6.5e-35 150.6 101 74.3
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 8.5e-35 150.2 101 74.3
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 8.5e-35 150.2 93 79.6
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.1e-34 149.8 101 72.3
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.1e-34 149.8 96 77.1
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.1e-34 149.8 101 72.3
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.1e-34 149.8 101 74.3
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 1.5e-34 149.4 101 75.2
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 101 72.3
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 2.5e-34 148.7 100 73.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 2.5e-34 148.7 98 74.5
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 3.2e-34 148.3 101 70.3
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 3.2e-34 148.3 96 75.0
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 4.2e-34 147.9 101 75.2
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 4.2e-34 147.9 101 71.3
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 5.5e-34 147.5 101 71.3
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 7.2e-34 147.1 101 72.3
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.2e-33 146.4 101 69.3
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.6e-33 146.0 97 73.2
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.6e-33 146.0 101 69.3
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.6e-33 146.0 101 69.3
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.6e-33 146.0 101 70.3
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.6e-33 146.0 99 71.7
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 70.3
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 72.3
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 69.3
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 70.3
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 69.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 2.7e-33 145.2 101 69.3
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 2.7e-33 145.2 101 69.3
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.7e-33 145.2 101 70.3
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 2.7e-33 145.2 99 71.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 2.7e-33 145.2 93 77.4
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.6e-33 144.8 98 72.4
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 3.6e-33 144.8 101 71.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 3.6e-33 144.8 100 73.0
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 4.7e-33 144.4 101 69.3
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 4.7e-33 144.4 98 71.4
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 4.7e-33 144.4 98 71.4
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.7e-33 144.4 100 71.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.7e-33 144.4 101 68.3
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 6.1e-33 144.1 101 69.3
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 6.1e-33 144.1 101 69.3
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 6.1e-33 144.1 98 68.4
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 8.0e-33 143.7 101 70.3
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.4e-32 142.9 100 71.0
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.8e-32 142.5 101 68.3
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 2.3e-32 142.1 101 67.3
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.3e-32 142.1 101 67.3
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.3e-32 142.1 101 67.3
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 3.0e-32 141.7 101 70.3
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 3.0e-32 141.7 101 67.3
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 67.3
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 67.3
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 5.2e-32 141.0 100 68.0
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 5.2e-32 141.0 101 68.3
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 5.2e-32 141.0 101 68.3
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 67.3
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 67.3
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 66.3
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 67.3
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 68.0
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 68.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.2e-31 139.8 101 66.3
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.5e-31 139.4 101 67.3
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.5e-31 139.4 96 69.8
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 2.0e-31 139.0 101 67.3
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 2.0e-31 139.0 101 72.3
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 2.6e-31 138.7 99 68.7
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.6e-31 138.7 101 66.3
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.6e-31 138.7 101 66.3
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.6e-31 138.7 101 66.3
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 2.6e-31 138.7 101 66.3
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.6e-31 138.7 101 67.3
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 2.6e-31 138.7 98 67.3
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.4e-31 138.3 101 65.3
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 4.4e-31 137.9 96 71.9
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 7.5e-31 137.1 98 69.4
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 7.5e-31 137.1 101 63.4
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 9.8e-31 136.7 100 67.0
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 9.8e-31 136.7 101 67.3
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 9.8e-31 136.7 97 72.2
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.7e-30 136.0 100 70.0
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.7e-30 136.0 99 70.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.7e-30 136.0 99 70.7
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 3.7e-30 134.8 97 74.2
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.7e-30 134.8 97 69.1
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.8e-30 134.4 97 68.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 4.8e-30 134.4 100 64.0
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 6.3e-30 134.0 94 70.2
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.8e-29 132.5 91 79.1
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 2.4e-29 132.1 98 68.4
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.1e-29 130.2 100 61.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 3.5e-28 128.3 101 64.4
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 3.8e-27 124.8 97 66.0
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.1e-26 123.2 97 64.9
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.9e-26 122.5 97 64.9
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.6e-25 119.4 97 62.9
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.6e-25 119.4 97 62.9
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 6.3e-22 107.5 73 68.5
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 8.3e-22 107.1 73 67.1
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.4e-21 106.3 160 41.2
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.4e-21 106.3 74 66.2
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.4e-21 106.3 69 72.5
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.4e-21 105.5 103 59.2
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.4e-21 105.5 73 68.5
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.1e-21 105.1 102 59.8
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.2e-20 103.2 73 67.1
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 4.5e-20 101.3 72 65.3
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 4.5e-20 101.3 69 72.5
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.1e-18 96.7 73 64.4
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.5e-18 96.3 85 56.5
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 9.5e-18 93.6 84 56.0
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.8e-17 92.0 66 62.1
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 3.0e-16 88.6 101 51.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.7e-14 82.8 83 51.8
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 6.4e-14 80.9 69 55.1
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 7.8e-12 73.9 96 49.0
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.0e-11 73.6 54 64.8
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 2.3e-11 72.4 61 57.4
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 6.6e-11 70.9 85 51.8


User provided reference genes

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