Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492021 Rosa chinensis HOM05D003109 ORTHO05D003578 7.9e-61 236.9 116 100.0
RcHm_v2.0_Chr5g0021311 Rosa chinensis HOM05D003109 ORTHO05D003578 2.6e-19 99.0 110 51.8
RcHm_v2.0_Chr4g0419251 Rosa chinensis HOM05D003109 ORTHO05D003578 1.4e-17 93.2 109 52.3
FvH4_3g13081 Fragaria vesca HOM05D003109 ORTHO05D003578 7.7e-16 87.4 111 51.4
FAN11G2415 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.7e-15 86.3 111 50.5
FAN25G0950 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.8e-15 85.1 96 52.1
Prupe.1G101100 Prunus persica HOM05D003109 ORTHO05D003578 3.2e-14 82.0 110 48.2
TWI38G1552 Tripterygium wilfordii HOM05D003109 ORTHO05D003578 3.2e-14 82.0 110 44.5
Atru.chr10.290 Acer truncatum HOM05D003109 ORTHO05D003578 3.0e-12 75.5 110 44.5
Haze_05250 Corylus avellana HOM05D003109 ORTHO05D003578 4.0e-12 75.1 110 41.8
MD10G1226500 Malus domestica HOM05D003109 ORTHO05D003578 4.0e-12 75.1 115 46.1
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 5.2e-12 74.7 111 45.9
QL10p022110 Quercus lobata HOM05D003109 ORTHO05D003578 5.2e-12 74.7 110 41.8
RcHm_v2.0_Chr5g0021271 Rosa chinensis HOM05D003109 ORTHO05D003578 8.8e-12 73.9 112 44.6
Manes.03G071100 Manihot esculenta HOM05D003109 ORTHO05D003578 1.2e-11 73.6 110 40.9
Cpa.g.sc30.95 Carica papaya HOM05D003109 ORTHO05D003578 2.0e-11 72.8 110 41.8
Dinv26304 Davidia involucrata HOM05D003109 ORTHO05D003578 2.6e-11 72.4 107 45.8
Atru.chr10.286 Acer truncatum HOM05D003109 ORTHO05D003578 3.4e-11 72.0 107 44.9
Dinv26326 Davidia involucrata HOM05D003109 ORTHO05D003578 1.3e-10 70.1 106 44.3
FAN25G0248 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.7e-10 69.7 126 40.5
Atru.chr10.654 Acer truncatum HOM05D003109 ORTHO05D003578 2.2e-10 69.3 111 40.5
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 2.2e-10 69.3 110 40.0
Aqoxy4G00011 Aquilegia oxysepala HOM05D003109 ORTHO05D003578 2.8e-10 68.9 112 41.1
Thecc.09G141000 Theobroma cacao HOM05D003109 ORTHO05D003578 3.7e-10 68.6 110 40.9
TAR627G0606 Trochodendron aralioides HOM05D003109 ORTHO05D003578 3.7e-10 68.6 108 46.3
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 4.8e-10 68.2 111 43.2
PGR042G1455 Punica granatum HOM05D003109 ORTHO05D003578 4.8e-10 68.2 110 42.7
CAN.G809.44 Capsicum annuum HOM05D003109 ORTHO05D003578 6.3e-10 67.8 111 44.1
Duzib187G1888 Durio zibethinus HOM05D003109 ORTHO05D003578 8.3e-10 67.4 110 40.0
Nitab4.5_0000844g0340 Nicotiana tabacum HOM05D003109 ORTHO05D003578 8.3e-10 67.4 110 40.9
PSO675G6279 Papaver somniferum HOM05D003109 ORTHO05D003578 8.3e-10 67.4 111 44.1
Eucgr.E04318 Eucalyptus grandis HOM05D003109 ORTHO05D003578 1.1e-09 67.0 114 43.0
RcHm_v2.0_Chr5g0021291 Rosa chinensis HOM05D003109 ORTHO05D003578 1.1e-09 67.0 93 48.4
Sopen02g026500 Solanum pennellii HOM05D003109 ORTHO05D003578 1.4e-09 66.6 111 41.4
Actinidia33648 Actinidia chinensis HOM05D003109 ORTHO05D003578 1.8e-09 66.2 107 43.0
Ciclev10016066m.g Citrus clementina HOM05D003109 ORTHO05D003578 1.8e-09 66.2 110 39.1
FAN11G0200 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.8e-09 66.2 111 38.7
Nn7g38363 Nelumbo nucifera HOM05D003109 ORTHO05D003578 2.4e-09 65.9 113 40.7
PSO675G7745 Papaver somniferum HOM05D003109 ORTHO05D003578 2.4e-09 65.9 111 43.2
PGR042G3123 Punica granatum HOM05D003109 ORTHO05D003578 2.4e-09 65.9 110 42.7
Sabra03G0112100 Salix brachista HOM05D003109 ORTHO05D003578 2.4e-09 65.9 111 40.5
PGSC0003DMG400007330 Solanum tuberosum HOM05D003109 ORTHO05D003578 2.4e-09 65.9 111 41.4
Ciclev10016075m.g Citrus clementina HOM05D003109 ORTHO05D003578 3.1e-09 65.5 110 37.3
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 3.1e-09 65.5 111 41.4
Sed0014929 Sechium edule HOM05D003109 ORTHO05D003578 3.1e-09 65.5 110 42.7
FAN21G3259 Fragaria x ananassa HOM05D003109 ORTHO05D003578 4.1e-09 65.1 111 38.7
Potri.003G154900 Populus trichocarpa HOM05D003109 ORTHO05D003578 4.1e-09 65.1 110 37.3
Solyc02g081880.3 Solanum lycopersicum HOM05D003109 ORTHO05D003578 4.1e-09 65.1 111 40.5
CDE01G0767 Ceratophyllum demersum HOM05D003109 ORTHO05D003578 5.4e-09 64.7 111 41.4
MBI18_g01517_MAGBIO Magnolia biondii HOM05D003109 ORTHO05D003578 7.0e-09 64.3 113 38.9
Os09g0560700 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 9.1e-09 63.9 110 36.4
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 9.1e-09 63.9 110 37.3
vmacro03561 Vaccinium macrocarpon HOM05D003109 ORTHO05D003578 9.1e-09 63.9 109 39.4
Gohir.D05G012300 Gossypium hirsutum HOM05D003109 ORTHO05D003578 1.2e-08 63.5 110 36.4
MELO3C007005.2 Cucumis melo HOM05D003109 ORTHO05D003578 1.6e-08 63.2 110 36.4
Sc17g0004290 Simmondsia chinensis HOM05D003109 ORTHO05D003578 1.6e-08 63.2 110 40.9
Gohir.A05G011600 Gossypium hirsutum HOM05D003109 ORTHO05D003578 2.0e-08 62.8 110 36.4
Gohir.D05G012500 Gossypium hirsutum HOM05D003109 ORTHO05D003578 2.0e-08 62.8 110 36.4
Gorai.N022400 Gossypium raimondii HOM05D003109 ORTHO05D003578 2.0e-08 62.8 110 36.4
Lj1A1150T110 Lonicera japonica HOM05D003109 ORTHO05D003578 2.0e-08 62.8 110 41.8
Carub.0001s2928 Capsella rubella HOM05D003109 ORTHO05D003578 2.7e-08 62.4 110 37.3
CsaV3_6G053040 Cucumis sativus L. HOM05D003109 ORTHO05D003578 2.7e-08 62.4 110 40.9
Gorai.009G012600 Gossypium raimondii HOM05D003109 ORTHO05D003578 2.7e-08 62.4 110 36.4
MSTRG.14821 Avicennia marina HOM05D003109 ORTHO05D003578 3.5e-08 62.0 110 43.6
GSVIVG01012158001 Vitis vinifera HOM05D003109 ORTHO05D003578 3.5e-08 62.0 111 38.7
Lj6g0002854 Lotus japonicus HOM05D003109 ORTHO05D003578 4.5e-08 61.6 115 39.1
ClCG01G025830 Citrullus lanatus HOM05D003109 ORTHO05D003578 5.9e-08 61.2 110 36.4
VMungo1309G0023 Vigna mungo HOM05D003109 ORTHO05D003578 5.9e-08 61.2 112 34.8
A09p29000 Brassica napus HOM05D003109 ORTHO05D003578 1.3e-07 60.1 110 34.5
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.3e-07 60.1 115 37.4
AT1G30910 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 1.7e-07 59.7 110 35.5
CANSAT35G0308 Cannabis sativa HOM05D003109 ORTHO05D003578 1.7e-07 59.7 110 32.7
Ca_01981_v3 Cicer arietinum L. HOM05D003109 ORTHO05D003578 1.7e-07 59.7 113 35.4
Lalb_Chr20g0114331 Lupinus albus HOM05D003109 ORTHO05D003578 1.7e-07 59.7 112 38.4
Rhsim07G0107500 Rhododendron simsii HOM05D003109 ORTHO05D003578 1.7e-07 59.7 106 36.8
BraA09t38464Z Brassica rapa HOM05D003109 ORTHO05D003578 2.3e-07 59.3 110 34.5
Glyma.09G049900 Glycine max HOM05D003109 ORTHO05D003578 2.3e-07 59.3 113 36.3
Ah.08g218200 Amaranthus hybridus HOM05D003109 ORTHO05D003578 2.9e-07 58.9 110 37.3
arahy.Tifrunner.gnm1.ann1.D1QZC1 Arachis hypogaea HOM05D003109 ORTHO05D003578 2.9e-07 58.9 114 40.4
CARHR030480 Cardamine hirsuta HOM05D003109 ORTHO05D003578 2.9e-07 58.9 110 34.5
HanXRQChr01g0006281 Helianthus annuus HOM05D003109 ORTHO05D003578 2.9e-07 58.9 105 36.2
arahy.Tifrunner.gnm1.ann1.4IPC1A Arachis hypogaea HOM05D003109 ORTHO05D003578 3.8e-07 58.5 114 39.5
EL10Ac7g17662 Beta vulgaris HOM05D003109 ORTHO05D003578 3.8e-07 58.5 110 38.2
BcaB07g30929 Brassica carinata HOM05D003109 ORTHO05D003578 3.8e-07 58.5 113 37.2
Cc09_g04980 Coffea canephora HOM05D003109 ORTHO05D003578 3.8e-07 58.5 107 42.1
Os09g0560800 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 3.8e-07 58.5 110 34.5
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 5.0e-07 58.2 108 36.1
Rhsim05G0003100 Rhododendron simsii HOM05D003109 ORTHO05D003578 5.0e-07 58.2 116 35.3
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 6.6e-07 57.8 106 36.8
Sp6g07560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 6.6e-07 57.8 110 34.5
TPR.G26578 Trifolium pratense HOM05D003109 ORTHO05D003578 6.6e-07 57.8 112 34.8
Glyma.09G050100 Glycine max HOM05D003109 ORTHO05D003578 8.6e-07 57.4 112 36.6
Lj6g0023516 Lotus japonicus HOM05D003109 ORTHO05D003578 8.6e-07 57.4 113 39.8
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 1.1e-06 57.0 109 35.8
AL1G45200 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 1.5e-06 56.6 107 35.5
Zm00001eb104730 Zea mays HOM05D003109 ORTHO05D003578 1.5e-06 56.6 110 34.5
BcaC04g20996 Brassica carinata HOM05D003109 ORTHO05D003578 1.9e-06 56.2 110 34.5
C09p36850 Brassica napus HOM05D003109 ORTHO05D003578 1.9e-06 56.2 110 34.5
BolC9t56516H Brassica oleracea HOM05D003109 ORTHO05D003578 1.9e-06 56.2 110 34.5
Migut.K00496 Erythranthe guttata HOM05D003109 ORTHO05D003578 3.3e-06 55.5 111 36.0
Thhalv10011673m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 3.3e-06 55.5 110 34.5
FAN21G0114 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.3e-06 55.5 35 82.9
Psat1g150920 Pisum sativum HOM05D003109 ORTHO05D003578 3.3e-06 55.5 112 31.2
SalBow7G1084 Salvia bowleyana HOM05D003109 ORTHO05D003578 3.3e-06 55.5 112 37.5
VMungo1309G1953 Vigna mungo HOM05D003109 ORTHO05D003578 5.5e-06 54.7 112 33.0
Aa31sc456G20 Aethionema arabicum HOM05D003109 ORTHO05D003578 7.2e-06 54.3 104 35.6
AUR62025463 Chenopodium quinoa HOM05D003109 ORTHO05D003578 7.2e-06 54.3 111 35.1
Hma1.2p1_0185F.1_g081450 Hydrangea macrophylla HOM05D003109 ORTHO05D003578 7.2e-06 54.3 114 40.4
Phvul.009G243300 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 7.2e-06 54.3 112 33.0
Phvul.009G243200 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 9.5e-06 53.9 112 32.1
Hund12397 Selenicereus undatus HOM05D003109 ORTHO05D003578 9.5e-06 53.9 110 37.3


User provided reference genes

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