Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-41 169.9 85 100.0
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-33 143.3 86 86.0
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-33 143.3 86 86.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-33 143.3 86 86.0
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-33 143.3 86 86.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-32 141.7 86 84.9
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.9e-30 133.7 86 80.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 9.0e-30 133.3 84 82.1
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.0e-29 132.1 86 80.2
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 4.5e-29 131.0 84 81.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 5.1e-25 117.5 84 72.6
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 5.1e-25 117.5 84 72.6
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-25 116.7 60 98.3
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.1e-22 108.2 86 65.1
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 3.1e-22 108.2 85 64.7
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 6.9e-22 107.1 81 67.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 2.0e-21 105.5 85 64.7
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.4e-21 104.8 85 64.7
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 4.5e-21 104.4 63 87.3
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.8e-21 104.0 85 63.5
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 5.8e-21 104.0 84 63.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 5.8e-21 104.0 84 63.1
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.7e-20 102.4 85 62.4
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 3.8e-20 101.3 86 60.5
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.9e-19 99.0 86 60.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.5e-19 98.6 86 58.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 3.2e-19 98.2 85 61.2
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 4.2e-19 97.8 86 53.5
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 5.5e-19 97.4 83 61.4
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 7.1e-19 97.1 67 79.1
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.2e-18 96.3 84 59.5
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.2e-18 96.3 81 61.7
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.2e-18 96.3 84 60.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.2e-18 96.3 85 60.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.6e-18 95.9 86 58.1
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.1e-18 95.5 83 59.0
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.5e-18 94.7 83 60.2
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.0e-18 94.0 83 59.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 7.9e-18 93.6 85 55.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.0e-17 93.2 85 58.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.0e-17 93.2 85 58.8
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.3e-17 92.8 83 54.2
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.3e-17 92.0 86 58.1
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.0e-17 91.7 80 57.5
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 3.9e-17 91.3 85 56.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.9e-17 91.3 84 57.1
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.9e-17 91.3 84 57.1
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 5.1e-17 90.9 80 56.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.1e-17 90.9 85 55.3
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 8.7e-17 90.1 87 51.7
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 8.7e-17 90.1 79 60.8
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.9e-16 89.0 82 56.1
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 2.5e-16 88.6 85 56.5
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 2.5e-16 88.6 84 57.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.5e-16 88.6 85 56.5
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.5e-16 88.6 76 60.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 3.3e-16 88.2 79 53.2
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.3e-16 87.8 77 61.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 4.3e-16 87.8 82 54.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 4.3e-16 87.8 83 57.8
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.3e-16 87.8 76 61.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 5.7e-16 87.4 83 49.4
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 5.7e-16 87.4 83 49.4
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 5.7e-16 87.4 83 49.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 5.7e-16 87.4 84 56.0
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 9.7e-16 86.7 83 48.2
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 9.7e-16 86.7 85 54.1
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.3e-15 86.3 85 52.9
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.3e-15 86.3 83 54.2
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.6e-15 85.9 83 49.4
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.6e-15 85.9 83 49.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.8e-15 85.1 63 71.4
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.7e-15 84.7 73 61.6
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 3.7e-15 84.7 82 52.4
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 4.8e-15 84.3 82 53.7
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 4.8e-15 84.3 82 53.7
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 4.8e-15 84.3 82 53.7
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 6.3e-15 84.0 72 61.1
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 8.2e-15 83.6 85 55.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 8.2e-15 83.6 82 52.4
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.1e-14 83.2 79 54.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.1e-14 83.2 82 52.4
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.1e-14 81.6 80 50.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.1e-14 81.6 80 50.0
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.9e-14 80.5 84 48.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 9.0e-14 80.1 82 51.2
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.5e-13 79.3 69 59.4
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.0e-13 79.0 78 51.3
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.6e-13 78.6 73 58.9
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.6e-13 78.6 73 58.9
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.0e-12 76.6 79 53.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.3e-12 76.3 77 50.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.1e-11 73.2 74 55.4
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.9e-11 72.4 79 46.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 3.2e-11 71.6 76 55.3
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.2e-11 71.6 71 54.9
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 4.2e-11 71.2 82 50.0
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 7.2e-11 70.5 89 46.1
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 9.4e-11 70.1 78 51.3
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.2e-10 69.7 84 42.9
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 2.1e-10 68.9 83 44.6
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.1e-10 68.9 78 50.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 4.6e-10 67.8 68 50.0
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 6.1e-10 67.4 83 44.6
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.0e-09 66.6 71 49.3
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.4e-09 66.2 66 54.5
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.8e-09 65.9 73 47.9
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.9e-08 62.4 69 50.7
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 3.3e-08 61.6 83 42.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 5.7e-08 60.8 71 46.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.7e-08 60.8 65 46.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.7e-08 60.8 67 53.7
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 6.3e-07 57.4 58 50.0
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 8.2e-07 57.0 65 46.2
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.8e-06 55.8 59 49.2
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.4e-06 55.5 62 48.4
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 3.1e-06 55.1 58 50.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.9e-06 53.9 54 55.6


User provided reference genes

Program Settings