Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.8e-81 305.1 140 100.0
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 6.1e-76 287.3 140 93.6
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.8e-75 285.8 140 93.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.0e-75 284.6 140 92.9
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.5e-74 282.7 140 92.1
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-72 274.2 140 90.0
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-72 274.2 139 88.5
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-72 274.2 140 90.0
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.6e-71 272.7 134 91.0
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 2.7e-71 271.9 140 89.3
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 9.2e-64 246.9 134 80.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 6.6e-62 240.7 137 77.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.5e-61 238.8 137 75.2
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-61 238.0 137 74.5
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.1e-60 235.7 137 73.7
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.8e-60 235.3 137 73.7
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.9
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.7e-60 234.6 137 72.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.7e-60 234.6 136 75.0
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.8e-59 232.6 137 71.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.1e-59 231.9 144 69.4
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 3.1e-59 231.9 137 73.0
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 5.2e-59 231.1 134 74.6
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.9e-59 230.3 137 71.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 8.9e-59 230.3 137 70.8
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.5e-58 229.6 136 71.3
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 73.1
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-58 229.6 137 74.5
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 70.4
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 2.6e-58 228.8 136 71.3
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 4.4e-58 228.0 134 73.9
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 4.4e-58 228.0 134 73.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 7.5e-58 227.3 135 71.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 71.9
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 71.6
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 72.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 72.4
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.2e-57 225.7 137 70.1
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 3.7e-57 224.9 135 70.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.7e-57 224.9 132 71.2
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 3.7e-57 224.9 134 72.4
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.7e-57 224.9 135 68.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.7e-57 224.9 126 75.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.9e-57 224.6 140 67.1
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.9e-57 224.6 135 70.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 6.4e-57 224.2 134 70.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 8.3e-57 223.8 134 71.6
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 71.1
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 72.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 69.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 70.9
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.4e-56 222.2 135 67.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 2.4e-56 222.2 135 71.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.2e-56 221.9 133 71.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.4e-56 221.1 137 67.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 5.4e-56 221.1 134 69.4
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 5.4e-56 221.1 135 68.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 7.1e-56 220.7 134 69.4
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 7.1e-56 220.7 136 66.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.2e-55 219.9 134 71.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.2e-55 219.9 137 69.3
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-55 219.5 135 68.1
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-55 219.5 121 79.3
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.6e-55 219.5 135 68.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.6e-55 219.5 133 69.2
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-55 218.8 140 65.7
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.5e-55 218.4 137 70.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 3.5e-55 218.4 137 67.2
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.6e-55 218.0 136 70.6
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 4.6e-55 218.0 135 68.9
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 4.6e-55 218.0 135 68.1
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.0e-55 217.6 126 73.0
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 69.4
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.7e-54 216.1 137 67.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.3e-54 215.7 135 66.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 3.0e-54 215.3 132 68.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 3.9e-54 214.9 127 72.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.9e-54 214.9 138 65.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.9e-54 214.9 134 69.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.6e-54 214.2 137 67.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.6e-54 213.8 126 73.0
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.5e-53 213.0 136 66.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.9e-53 212.6 135 67.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.5e-53 212.2 131 67.9
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.5e-53 212.2 135 68.1
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 5.6e-53 211.1 121 71.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 5.6e-53 211.1 131 68.7
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.1e-52 209.1 134 67.2
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 2.1e-52 209.1 135 65.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-52 209.1 121 71.9
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.4e-51 206.5 137 65.0
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.8e-51 206.1 134 67.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.3e-51 205.7 134 64.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.3e-51 205.7 138 65.2
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.1e-51 205.3 134 66.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 4.0e-51 204.9 134 66.4
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 8.9e-51 203.8 134 64.2
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 8.9e-51 203.8 134 64.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 8.9e-51 203.8 121 73.6
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.2e-50 203.4 134 66.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.4e-50 201.8 125 72.8
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 5.8e-50 201.1 136 64.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 7.6e-50 200.7 139 61.2
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.6e-50 200.7 121 70.2
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 9.9e-50 200.3 133 63.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.7e-49 199.5 173 54.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.2e-49 199.1 133 64.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.9e-49 198.7 134 62.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.8e-49 198.4 133 63.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 3.8e-49 198.4 133 63.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 6.4e-49 197.6 134 61.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.4e-49 197.6 136 61.0
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 8.4e-49 197.2 134 61.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.4e-48 196.4 120 70.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.9e-48 196.1 136 60.3
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 3.2e-48 195.3 125 68.8
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.2e-47 193.4 128 60.9
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.6e-47 191.4 135 58.5
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 7.8e-47 190.7 131 61.1
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.0e-46 190.3 133 62.4
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.3e-46 189.9 121 63.6
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.9e-45 186.0 128 60.9
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.3e-45 184.9 140 57.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.3e-45 184.9 128 60.9
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.8e-44 182.2 116 63.8
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 8.1e-44 180.6 134 59.7
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.0e-43 178.3 137 59.1
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.0e-42 176.0 133 57.1
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.6e-42 175.6 133 58.6
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 8.4e-41 170.6 128 59.4
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.1e-40 170.2 109 66.1
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.4e-40 169.1 101 68.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.8e-39 164.1 133 54.9
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.9e-38 161.8 99 70.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 8.7e-38 160.6 136 55.1
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.3e-37 158.3 125 54.4
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-36 156.8 130 53.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.6e-36 156.4 118 56.8
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.8e-36 154.8 122 54.9
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-34 149.4 100 67.0
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.3e-33 146.7 96 67.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-33 146.4 75 89.3
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 6.4e-33 144.4 86 73.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 5.1e-30 134.8 147 41.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.6e-28 128.6 75 74.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 3.8e-25 118.6 74 71.6
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.1e-22 108.2 112 45.5
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-20 102.4 63 69.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.3e-19 98.2 78 55.1
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 8.4e-17 90.9 80 51.2
FAN26G2730 Fragaria x ananassa HOM05D047727 ORTHO05D207773 7.9e-07 57.8 103 40.8


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