Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.2e-81 305.4 140 100.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 9.2e-80 300.1 140 97.1
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.7e-78 295.8 140 95.0
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.1e-77 293.1 140 94.3
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.1e-76 287.3 140 92.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 8.0e-76 287.0 140 93.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-74 283.1 140 92.1
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-74 282.7 140 91.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-74 282.3 139 89.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 4.4e-74 281.2 134 91.8
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 6.8e-67 257.3 134 82.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-66 255.4 137 81.0
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.7e-65 251.5 137 78.8
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.4e-64 249.6 137 78.1
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.4e-64 248.8 137 78.1
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.0e-64 247.3 134 77.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 137 75.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.0e-63 245.7 136 77.2
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.7e-63 245.4 137 75.9
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.8e-63 243.8 137 76.6
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 7.8e-63 243.8 136 76.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.0e-62 243.4 137 75.2
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.7e-62 242.7 137 73.7
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.3e-62 242.3 137 75.2
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 76.9
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 5.0e-62 241.1 134 75.4
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 5.0e-62 241.1 134 77.6
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 6.6e-62 240.7 136 73.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 8.6e-62 240.4 144 70.8
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 8.6e-62 240.4 135 75.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 8.6e-62 240.4 135 77.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 75.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 75.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.1e-61 240.0 134 76.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.9e-61 239.2 134 76.1
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-61 238.8 137 75.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.3e-61 238.4 134 76.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.3e-61 238.4 134 76.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 73.1
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 5.6e-61 237.7 135 74.1
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.6e-60 236.1 134 73.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.1e-60 235.7 135 71.9
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 2.8e-60 235.3 135 74.8
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.6e-60 235.0 132 72.7
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 3.6e-60 235.0 134 73.9
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.6e-60 235.0 134 76.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 3.6e-60 235.0 137 71.5
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 4.7e-60 234.6 134 73.9
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.7e-60 234.6 135 72.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 4.7e-60 234.6 136 71.3
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 8.1e-60 233.8 133 75.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.1e-60 233.8 140 69.3
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.1e-60 233.8 137 72.3
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.1e-59 233.4 127 76.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 73.9
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.4e-59 233.0 135 72.6
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.4e-59 233.0 135 71.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-59 232.6 137 70.1
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.3e-59 232.3 134 75.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 2.3e-59 232.3 135 72.6
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 4.0e-59 231.5 135 70.4
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.0e-59 231.5 134 73.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 5.2e-59 231.1 135 74.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.9e-59 230.3 137 72.3
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.2e-58 229.9 137 70.8
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.5e-58 229.6 136 72.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.5e-58 229.6 133 70.7
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 70.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-58 229.2 121 80.2
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.4e-58 228.4 135 69.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.4e-58 228.0 140 67.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 4.4e-58 228.0 123 77.2
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 4.4e-58 228.0 135 70.4
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 7.5e-58 227.3 127 76.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.5e-58 227.3 138 70.3
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.3e-57 226.5 137 70.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 70.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.7e-57 226.1 132 72.0
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.7e-57 226.1 134 71.6
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.9e-57 225.3 137 69.3
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.1e-56 223.4 131 71.8
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.4e-56 222.2 136 67.6
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.4e-56 222.2 135 70.4
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 2.4e-56 222.2 131 71.8
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 5.4e-56 221.1 135 67.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 9.2e-56 220.3 126 72.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-55 219.2 121 74.4
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.1e-55 219.2 135 69.6
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.7e-55 218.8 131 71.8
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.5e-55 218.4 134 70.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 70.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.0e-54 216.9 138 67.4
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 67.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 3.0e-54 215.3 134 68.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.9e-54 214.9 134 67.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 5.1e-54 214.5 134 67.2
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 5.1e-54 214.5 134 67.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 8.6e-54 213.8 136 66.9
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-53 213.4 121 74.4
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.5e-53 213.0 134 68.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.9e-53 212.6 137 66.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 2.5e-53 212.2 125 73.6
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 5.6e-53 211.1 133 66.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.3e-53 210.7 121 72.7
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.2e-52 209.9 134 64.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.2e-52 209.9 134 65.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.6e-52 209.5 134 65.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.6e-52 209.5 133 68.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 2.1e-52 209.1 133 66.2
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.6e-52 208.4 139 64.0
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 3.6e-52 208.4 120 75.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.8e-51 206.1 136 63.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.3e-51 205.7 133 65.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.3e-51 205.7 125 69.6
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.2e-51 204.5 136 62.5
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 5.2e-51 204.5 173 56.6
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.2e-50 203.4 125 64.8
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.6e-50 202.2 129 64.3
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.3e-49 199.9 133 64.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 6.4e-49 197.6 131 64.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 6.4e-49 197.6 128 64.8
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-48 196.8 126 65.1
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.4e-48 195.7 135 60.7
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.1e-48 194.9 140 60.0
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 4.1e-48 194.9 134 64.2
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 7.1e-48 194.1 116 67.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.3e-46 189.1 133 62.4
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-46 188.7 137 62.0
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.3e-45 185.3 133 60.9
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 7.3e-45 184.1 128 64.1
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.9e-43 177.2 133 60.2
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.0e-42 176.0 112 65.2
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 5.8e-42 174.5 101 69.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-41 173.3 130 60.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 8.4e-41 170.6 99 73.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.2e-39 166.8 136 56.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 5.1e-38 161.4 100 71.0
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.9e-37 159.5 125 55.2
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.3e-37 157.5 118 57.6
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.8e-36 155.6 96 71.9
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.2e-36 154.5 75 92.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.1e-36 154.1 122 54.9
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.0e-35 151.8 86 74.4
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.5e-31 138.7 147 42.2
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.0e-30 137.1 75 80.0
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-26 123.6 74 74.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-23 113.6 112 48.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.7e-22 107.5 63 71.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-21 105.9 78 59.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 4.0e-19 98.6 80 55.0
FAN26G2730 Fragaria x ananassa HOM05D047727 ORTHO05D207773 2.5e-08 62.8 103 42.7
FAN19G2898 Fragaria x ananassa HOM05D047727 ORTHO05D205236 2.3e-06 56.2 42 66.7


User provided reference genes

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