Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0491441 Rosa chinensis HOM05D000443 ORTHO05D344008 9.4e-76 287.0 165 100.0
RcHm_v2.0_Chr1g0360191 Rosa chinensis HOM05D000443 ORTHO05D001066 1.5e-20 103.6 139 48.2
Dinv34224 Davidia involucrata HOM05D000443 ORTHO05D001066 7.4e-12 74.7 51 66.7
Actinidia27559 Actinidia chinensis HOM05D000443 ORTHO05D001066 4.8e-11 72.0 77 46.8
Manes.05G021300 Manihot esculenta HOM05D000443 ORTHO05D001066 1.4e-10 70.5 54 64.8
THA.LOC104825887 Tarenaya hassleriana HOM05D000443 ORTHO05D001066 1.4e-10 70.5 54 59.3
Actinidia28111 Actinidia chinensis HOM05D000443 ORTHO05D001066 1.8e-10 70.1 56 58.9
Gorai.007G110200 Gossypium raimondii HOM05D000443 ORTHO05D001066 1.8e-10 70.1 70 50.0
TWI23G1242 Tripterygium wilfordii HOM05D000443 ORTHO05D001066 1.8e-10 70.1 44 75.0
Rhsim01G0174500 Rhododendron simsii HOM05D000443 ORTHO05D001066 2.4e-10 69.7 49 65.3
Duzib133G0122 Durio zibethinus HOM05D000443 ORTHO05D001066 3.1e-10 69.3 52 63.5
Prupe.2G191400 Prunus persica HOM05D000443 ORTHO05D001066 4.0e-10 68.9 60 55.0
GSVIVG01027176001 Vitis vinifera HOM05D000443 ORTHO05D001066 6.9e-10 68.2 59 55.9
EL10Ac1g00243 Beta vulgaris HOM05D000443 ORTHO05D001066 1.2e-09 67.4 51 56.9
CSS0004604 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D001066 1.2e-09 67.4 63 50.8
MD01G1084000 Malus domestica HOM05D000443 ORTHO05D001066 1.5e-09 67.0 148 35.1
Gohir.D11G103000 Gossypium hirsutum HOM05D000443 ORTHO05D001066 2.6e-09 66.2 47 63.8
Gohir.A11G098400 Gossypium hirsutum HOM05D000443 ORTHO05D001066 3.4e-09 65.9 44 65.9
QL09p036996 Quercus lobata HOM05D000443 ORTHO05D001066 3.4e-09 65.9 94 41.5
Gohir.A08G124900 Gossypium hirsutum HOM05D000443 ORTHO05D001066 4.5e-09 65.5 44 63.6
Gohir.D08G145900 Gossypium hirsutum HOM05D000443 ORTHO05D001066 4.5e-09 65.5 44 63.6
PGR031G1587 Punica granatum HOM05D000443 ORTHO05D001066 4.5e-09 65.5 133 33.1
Ciclev10023282m.g Citrus clementina HOM05D000443 ORTHO05D001066 7.6e-09 64.7 66 53.0
Sabra02G0139800 Salix brachista HOM05D000443 ORTHO05D001066 1.7e-08 63.5 48 60.4
TAR375G0213 Trochodendron aralioides HOM05D000443 ORTHO05D001066 2.2e-08 63.2 70 48.6
Atru.chr5.700 Acer truncatum HOM05D000443 ORTHO05D001066 2.9e-08 62.8 65 52.3
Cfa015969 Carpinus fangiana HOM05D000443 ORTHO05D001066 2.9e-08 62.8 48 56.2
Haze_00505 Corylus avellana HOM05D000443 ORTHO05D001066 2.9e-08 62.8 48 56.2
Potri.002G173600 Populus trichocarpa HOM05D000443 ORTHO05D001066 2.9e-08 62.8 48 58.3
Gorai.004G151200 Gossypium raimondii HOM05D000443 ORTHO05D001066 3.8e-08 62.4 44 61.4
Sc01g0002480 Simmondsia chinensis HOM05D000443 ORTHO05D001066 3.8e-08 62.4 60 50.0
Ah.05g179370 Amaranthus hybridus HOM05D000443 ORTHO05D001066 6.5e-08 61.6 51 52.9
Lsat_1_v5_gn_3_140360 Lactuca sativa HOM05D000443 ORTHO05D001066 8.4e-08 61.2 47 59.6
Lj9A600T50 Lonicera japonica HOM05D000443 ORTHO05D001066 8.4e-08 61.2 41 65.9
Eucgr.D02386 Eucalyptus grandis HOM05D000443 ORTHO05D001066 1.4e-07 60.5 49 53.1
FvH4_7g16940 Fragaria vesca HOM05D000443 ORTHO05D001066 1.4e-07 60.5 50 60.0
Cc02_g39590 Coffea canephora HOM05D000443 ORTHO05D001066 2.5e-07 59.7 60 50.0
SMO201G0178 Selaginella moellendorffii HOM05D000443 ORTHO05D001066 2.5e-07 59.7 41 63.4
FAN03G0756 Fragaria x ananassa HOM05D000443 ORTHO05D001066 3.2e-07 59.3 50 58.0
Nn3g18932 Nelumbo nucifera HOM05D000443 ORTHO05D001066 4.2e-07 58.9 58 44.8
AUR62004512 Chenopodium quinoa HOM05D000443 ORTHO05D001066 5.5e-07 58.5 41 63.4
MBI18_g01157_MAGBIO Magnolia biondii HOM05D000443 ORTHO05D001066 5.5e-07 58.5 52 53.8
FAN10G1695 Fragaria x ananassa HOM05D000443 ORTHO05D001066 7.1e-07 58.2 50 58.0
HanXRQChr17g0534701 Helianthus annuus HOM05D000443 ORTHO05D001066 2.1e-06 56.6 42 64.3
SEGI_34768 Sequoiadendron giganteum HOM05D000443 ORTHO05D001066 4.6e-06 55.5 41 56.1
Mapoly0099s0039 Marchantia polymorpha HOM05D000443 ORTHO05D001066 6.0e-06 55.1 41 53.7
Mapoly0119s0051 Marchantia polymorpha HOM05D000443 ORTHO05D001066 6.0e-06 55.1 80 33.8
SEGI_07363 Sequoiadendron giganteum HOM05D000443 ORTHO05D001066 6.0e-06 55.1 41 58.5


User provided reference genes

Program Settings