Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1953.7 1033 100.0
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1699.1 1056 87.0
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1670.6 1030 87.4
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1536.5 1038 78.7
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1523.8 1040 77.5
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1511.1 1040 77.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1329.3 1010 69.3
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1321.6 998 69.7
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 0.0e+00 1307.4 728 92.0
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1302.7 728 91.9
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1288.9 1138 63.8
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1279.2 1041 67.0
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1268.1 1003 67.0
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1265.4 1043 66.4
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1263.4 1033 65.9
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1262.7 1044 64.9
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1257.7 1044 65.3
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1251.9 1054 65.4
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1249.6 1029 66.7
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1248.0 1036 65.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1245.7 1038 64.2
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1244.6 1023 65.7
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1234.2 1032 64.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1229.9 978 67.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1229.5 983 66.0
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1009 65.7
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1222.2 1032 64.2
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1212.2 1035 63.5
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1211.8 1038 63.2
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1209.5 1038 64.0
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1203.3 1035 63.8
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1196.8 1051 62.7
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1194.5 1012 65.0
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1192.9 1037 61.8
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1188.7 933 66.6
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1187.9 1008 63.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1184.9 1051 62.5
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1181.0 1038 61.6
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1178.3 1039 61.6
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1173.7 977 63.5
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1172.9 1007 62.5
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1166.8 960 65.0
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1166.0 1021 62.4
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1164.1 1040 60.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1162.5 1039 60.7
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1162.5 1007 62.1
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1157.9 1021 62.1
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1151.7 1021 60.9
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1149.4 1039 60.7
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1147.9 1039 60.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1144.8 1005 61.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1143.6 1041 60.9
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1139.8 1047 58.6
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1129.8 1004 60.4
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1129.8 1018 60.3
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1129.0 1028 61.2
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1120.5 1045 58.0
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1120.5 1051 59.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1120.1 1037 59.3
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1116.3 1051 60.4
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1115.5 1017 60.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1110.9 1052 59.4
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1106.3 1034 59.1
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1105.9 1039 58.8
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1100.5 1058 58.7
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1031 59.2
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1055 57.7
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1097.4 1020 59.3
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1097.4 1052 58.3
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1093.2 1049 57.3
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1092.8 1032 58.6
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1091.6 1038 58.7
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1084.3 1037 58.1
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1082.4 1054 57.4
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1044 57.5
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1044 57.5
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1077.4 1033 57.7
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 0.0e+00 1075.5 1030 57.6
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 9.1e-310 1067.0 1042 56.9
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.2e-309 1066.6 1042 56.9
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.0e-308 1063.5 1036 57.9
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 2.9e-308 1062.0 1047 56.8
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 1.0e-305 1053.5 1067 55.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 9.1e-302 1040.4 1004 57.4
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 3.5e-293 1011.9 1036 54.4
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.8e-290 1002.3 1168 51.7
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 4.7e-290 1001.5 1034 54.1
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.2e-282 974.5 739 67.8
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 9.2e-270 934.1 840 59.9
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.5e-267 926.8 1029 52.6
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 5.8e-264 914.8 734 64.9
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 1.5e-259 900.2 928 54.6
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 5.2e-257 891.7 777 61.4
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 2.4e-254 882.9 1036 50.8
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 1.0e-252 877.5 731 63.3
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 3.8e-231 805.8 638 65.5
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 2.0e-216 756.9 554 71.1
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.2e-208 731.1 987 45.8
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 5.5e-198 695.7 649 58.7
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 8.0e-197 691.8 553 64.7
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.2e-189 667.9 609 58.9
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 6.3e-178 629.0 1048 38.5
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.6e-168 597.8 713 49.2
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 8.1e-157 558.9 893 39.4
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 2.5e-150 537.3 922 38.3
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.6e-149 533.5 428 65.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.1e-148 531.9 668 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.4e-147 526.9 987 36.7
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.1e-97 362.5 810 37.2
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 8.2e-93 346.3 248 71.0
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.2e-90 338.2 316 57.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 2.6e-78 298.1 274 56.9
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-74 284.3 459 38.3
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.1e-72 278.5 243 61.7
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.2e-70 272.7 952 27.0
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.0e-70 271.9 407 41.5
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 9.8e-70 269.6 205 67.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.7e-69 268.9 365 43.6
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.6e-67 262.3 237 60.8
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 6.8e-63 246.9 195 61.0
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 7.5e-62 243.4 255 55.3
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 8.3e-53 213.4 244 53.7
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 8.3e-53 213.4 835 27.3
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.3e-41 174.5 134 68.7
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 3.4e-38 164.9 277 44.8
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.7e-37 161.4 108 75.9
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 8.1e-24 117.1 85 67.1
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 3.0e-18 98.6 64 73.4
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.9e-18 98.2 70 62.9
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 4.3e-17 94.7 68 66.2
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 5.6e-17 94.4 81 59.3
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.4e-15 89.7 66 65.2
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 7.6e-14 84.0 608 21.2
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 3.0e-10 72.0 91 47.3
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.5e-09 69.7 50 68.0
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 4.3e-09 68.2 78 47.4
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 3.7e-08 65.1 44 70.5
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.4e-06 58.5 58 56.9


User provided reference genes

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