Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0490961 Rosa chinensis HOM05D001482 ORTHO05D001499 6.1e-32 140.2 70 100.0
RcHm_v2.0_Chr2g0120771 Rosa chinensis HOM05D001482 ORTHO05D001499 1.4e-23 112.5 62 91.9
FAN23G0048 Fragaria x ananassa HOM05D001482 ORTHO05D001499 7.4e-22 106.7 62 85.5
FAN23G1169 Fragaria x ananassa HOM05D001482 ORTHO05D001499 9.7e-22 106.3 62 83.9
FAN26G2765 Fragaria x ananassa HOM05D001482 ORTHO05D001499 4.8e-21 104.0 62 83.9
FvH4_1g24280 Fragaria vesca HOM05D001482 ORTHO05D001499 1.1e-20 102.8 62 82.3
FAN19G3050 Fragaria x ananassa HOM05D001482 ORTHO05D001499 3.1e-20 101.3 62 80.6
FAN28G1478 Fragaria x ananassa HOM05D001482 ORTHO05D001499 5.0e-18 94.0 61 82.0
Prupe.1G109800 Prunus persica HOM05D001482 ORTHO05D001499 1.2e-16 89.4 62 72.6
MD13G1146100 Malus domestica HOM05D001482 ORTHO05D001499 2.0e-14 82.0 62 64.5
MD16G1140200 Malus domestica HOM05D001482 ORTHO05D001499 2.0e-14 82.0 62 64.5
Ciclev10004428m.g Citrus clementina HOM05D001482 ORTHO05D001499 4.8e-13 77.4 64 64.1
Cpa.g.sc146.49 Carica papaya HOM05D001482 ORTHO05D001499 8.2e-13 76.6 61 65.6
CiPaw.01G132200 Carya illinoinensis HOM05D001482 ORTHO05D001499 2.4e-12 75.1 64 59.4
Manes.03G210200 Manihot esculenta HOM05D001482 ORTHO05D001499 4.1e-12 74.3 63 63.5
CANSAT78G0618 Cannabis sativa HOM05D001482 ORTHO05D001499 5.3e-12 73.9 61 67.2
Haze_00812 Corylus avellana HOM05D001482 ORTHO05D001499 7.0e-12 73.6 67 59.7
Duzib151G0471 Durio zibethinus HOM05D001482 ORTHO05D001499 5.9e-11 70.5 64 60.9
Gohir.D02G062500 Gossypium hirsutum HOM05D001482 ORTHO05D001499 2.2e-10 68.6 66 57.6
Gorai.005G070400 Gossypium raimondii HOM05D001482 ORTHO05D001499 2.2e-10 68.6 66 57.6
QL06p013631 Quercus lobata HOM05D001482 ORTHO05D001499 2.9e-10 68.2 65 55.4
GSVIVG01017648001 Vitis vinifera HOM05D001482 ORTHO05D001499 2.9e-10 68.2 64 51.6
Gohir.A02G086500 Gossypium hirsutum HOM05D001482 ORTHO05D001499 3.8e-10 67.8 66 57.6
Glyma.17G038300 Glycine max HOM05D001482 ORTHO05D001499 5.0e-10 67.4 65 58.5
Sed0011250 Sechium edule HOM05D001482 ORTHO05D001499 8.5e-10 66.6 63 60.3
Thecc.04G309100 Theobroma cacao HOM05D001482 ORTHO05D001499 8.5e-10 66.6 62 59.7
Nitab4.5_0000745g0160 Nicotiana tabacum HOM05D001482 ORTHO05D001499 1.5e-09 65.9 65 55.4
Nitab4.5_0008312g0050 Nicotiana tabacum HOM05D001482 ORTHO05D001499 1.9e-09 65.5 63 57.1
Atru.chr4.3116 Acer truncatum HOM05D001482 ORTHO05D001499 4.2e-09 64.3 66 54.5
Glyma.07G233200 Glycine max HOM05D001482 ORTHO05D001499 5.5e-09 63.9 65 56.9
Lj4g0013730 Lotus japonicus HOM05D001482 ORTHO05D001499 5.5e-09 63.9 63 58.7
MELO3C021243.2 Cucumis melo HOM05D001482 ORTHO05D001499 7.2e-09 63.5 63 57.1
Lalb_Chr12g0200721 Lupinus albus HOM05D001482 ORTHO05D001499 7.2e-09 63.5 63 60.3
Psat0ss1196g0720 Pisum sativum HOM05D001482 ORTHO05D001499 7.2e-09 63.5 65 56.9
Rhsim04G0245500 Rhododendron simsii HOM05D001482 ORTHO05D001499 7.2e-09 63.5 48 62.5
Rhsim04G0246000 Rhododendron simsii HOM05D001482 ORTHO05D001499 7.2e-09 63.5 48 62.5
Sed0014165 Sechium edule HOM05D001482 ORTHO05D001499 9.4e-09 63.2 65 55.4
Oeu050113.1 Olea europaea HOM05D001482 ORTHO05D001499 2.7e-08 61.6 63 57.1
arahy.Tifrunner.gnm1.ann1.3VW7XE Arachis hypogaea HOM05D001482 ORTHO05D001499 4.7e-08 60.8 64 54.7
arahy.Tifrunner.gnm1.ann1.Z5TSV0 Arachis hypogaea HOM05D001482 ORTHO05D001499 4.7e-08 60.8 64 54.7
Sc19g0002210 Simmondsia chinensis HOM05D001482 ORTHO05D001499 4.7e-08 60.8 61 52.5
CsaV3_6G000100 Cucumis sativus L. HOM05D001482 ORTHO05D001499 6.1e-08 60.5 63 58.7
Ca_21390_v3 Cicer arietinum L. HOM05D001482 ORTHO05D001499 1.0e-07 59.7 65 53.8
Peaxi162Scf00164g00518 Petunia axillaris HOM05D001482 ORTHO05D001499 1.4e-07 59.3 65 52.3
Sopen05g031770 Solanum pennellii HOM05D001482 ORTHO05D001499 1.8e-07 58.9 65 52.3
Medtr4g123600 Medicago truncatula HOM05D001482 ORTHO05D001499 2.3e-07 58.5 66 51.5
PGR004G0232 Punica granatum HOM05D001482 ORTHO05D001499 2.3e-07 58.5 64 54.7
Solyc05g053260.3 Solanum lycopersicum HOM05D001482 ORTHO05D001499 2.3e-07 58.5 65 52.3
CAN.G305.44 Capsicum annuum HOM05D001482 ORTHO05D001499 3.0e-07 58.2 65 52.3
Cc03_g00380 Coffea canephora HOM05D001482 ORTHO05D001499 3.0e-07 58.2 62 56.5
Dinv15617 Davidia involucrata HOM05D001482 ORTHO05D001499 4.0e-07 57.8 39 71.8
Potri.010G152200 Populus trichocarpa HOM05D001482 ORTHO05D001499 4.0e-07 57.8 64 51.6
VMungo1215G1431 Vigna mungo HOM05D001482 ORTHO05D001499 4.0e-07 57.8 63 55.6
TPR.G12687 Trifolium pratense HOM05D001482 ORTHO05D001499 6.7e-07 57.0 65 49.2
COL.COLO4_34535 Corchorus olitorius HOM05D001482 ORTHO05D001499 8.8e-07 56.6 64 50.0
Sabra10G0117200 Salix brachista HOM05D001482 ORTHO05D000429 1.2e-06 56.2 64 46.9
Hund22668 Selenicereus undatus HOM05D001482 ORTHO05D001499 1.2e-06 56.2 61 49.2
TWI09G0618 Tripterygium wilfordii HOM05D001482 ORTHO05D001499 2.0e-06 55.5 63 50.8
AUR62030003 Chenopodium quinoa HOM05D001482 ORTHO05D001499 2.6e-06 55.1 64 48.4
Hma1.2p1_0013F.1_g008030 Hydrangea macrophylla HOM05D001482 ORTHO05D001499 2.6e-06 55.1 49 57.1
Lsat_1_v5_gn_1_40680 Lactuca sativa HOM05D001482 ORTHO05D001499 2.6e-06 55.1 65 53.8
Migut.G00014 Erythranthe guttata HOM05D001482 ORTHO05D001499 4.4e-06 54.3 64 51.6
Migut.O00390 Erythranthe guttata HOM05D001482 ORTHO05D001499 4.4e-06 54.3 64 51.6
Eucgr.H04095 Eucalyptus grandis HOM05D001482 ORTHO05D001499 4.4e-06 54.3 63 50.8
Phvul.003G119200 Phaseolus vulgaris HOM05D001482 ORTHO05D001499 4.4e-06 54.3 61 54.1
HanXRQChr09g0277461 Helianthus annuus HOM05D001482 ORTHO05D001499 5.7e-06 53.9 65 53.8
AUR62002581 Chenopodium quinoa HOM05D001482 ORTHO05D001499 7.5e-06 53.5 61 49.2


User provided reference genes

Program Settings