Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0488921 Rosa chinensis HOM05D000003 ORTHO05D035801 2.4e-92 342.0 161 100.0
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 1.0e-37 160.6 117 60.7
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 2.0e-30 136.3 150 43.3
FvH4_4g12950 Fragaria vesca HOM05D065330 ORTHO05D046328 4.5e-30 135.2 139 46.0
FvH4_4g08193 Fragaria vesca HOM05D000003 ORTHO05D000006 1.9e-25 119.8 118 44.9
FAN04G2364 Fragaria x ananassa HOM05D030836 ORTHO05D035801 1.6e-19 100.1 87 49.4
FvH4_6g29733 Fragaria vesca HOM05D000003 ORTHO05D000006 2.2e-16 89.7 83 43.4
AUR62019580 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.3e-15 85.1 118 39.8
FvH4_1g29861 Fragaria vesca HOM05D000003 ORTHO05D000004 2.0e-14 83.2 83 45.8
CANSAT80G2730 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-14 82.8 122 41.0
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 3.4e-14 82.4 97 41.2
CANSAT80G2461 Cannabis sativa HOM05D000003 ORTHO05D000006 1.3e-13 80.5 116 38.8
AUR62009847 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.3e-13 80.5 153 30.7
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 1.7e-13 80.1 146 32.9
CiPaw.06G011600 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.9e-13 79.3 117 35.0
CiPaw.16G000200 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.8e-13 79.0 119 35.3
AUR62010689 Chenopodium quinoa HOM05D000111 ORTHO05D000006 3.8e-13 79.0 153 30.7
CiPaw.16G004600 Carya illinoinensis HOM05D000003 ORTHO05D000006 6.5e-13 78.2 119 35.3
CANSAT56G2039 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-13 77.8 126 37.3
Psat6g011120 Pisum sativum HOM05D000003 ORTHO05D000006 1.1e-12 77.4 128 31.2
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-12 76.6 117 35.0
AUR62018313 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.9e-12 76.6 110 34.5
CiPaw.09G186400 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.5e-12 76.3 117 37.6
Hma1.2p1_0266F.1_g106910 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 2.5e-12 76.3 118 33.1
CiPaw.01G096500 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.2e-12 75.5 123 35.8
CANSAT01G2286 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-12 75.1 117 38.5
CANSAT78G1656 Cannabis sativa HOM05D000003 ORTHO05D000006 5.5e-12 75.1 111 36.9
CANSAT56G3772 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-12 74.3 115 36.5
QL08p004291 Quercus lobata HOM05D000003 ORTHO05D000006 9.4e-12 74.3 114 30.7
CiPaw.08G126800 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.2e-11 73.9 117 34.2
CANSAT01G1595 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-11 73.6 113 32.7
CANSAT21G0817 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-11 73.6 107 41.1
CANSAT35G0113 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-11 73.6 111 37.8
CANSAT11G0300 Cannabis sativa HOM05D000003 ORTHO05D000006 2.1e-11 73.2 125 36.8
CiPaw.16G066600 Carya illinoinensis HOM05D000003 ORTHO05D020382 2.1e-11 73.2 117 35.0
CANSAT54G1425 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-11 72.8 113 31.9
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-11 72.8 119 37.8
CANSAT64G0903 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-11 72.8 117 38.5
Manes.05G055002 Manihot esculenta HOM05D000003 ORTHO05D000004 2.7e-11 72.8 126 34.1
TPR.G40859 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-11 72.8 126 35.7
AUR62004939 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.6e-11 72.4 98 33.7
CANSAT54G2029 Cannabis sativa HOM05D000003 ORTHO05D000006 4.7e-11 72.0 122 39.3
CANSAT21G1305 Cannabis sativa HOM05D000003 ORTHO05D000006 6.1e-11 71.6 117 35.9
CANSAT64G2324 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-11 71.6 113 38.9
CANSAT78G1210 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-11 71.6 118 33.9
Manes.11G107251 Manihot esculenta HOM05D000003 ORTHO05D000006 6.1e-11 71.6 126 34.1
QL01p035015 Quercus lobata HOM05D000003 ORTHO05D000006 1.4e-10 70.5 122 34.4
CANSAT64G1542 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-10 69.7 117 33.3
Atru.chr2.1764 Acer truncatum HOM05D000003 ORTHO05D000006 3.0e-10 69.3 117 35.9
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-10 69.3 117 33.3
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-10 69.3 119 32.8
Sed0009564 Sechium edule HOM05D000003 ORTHO05D000006 3.9e-10 68.9 150 27.3
CANSAT01G3181 Cannabis sativa HOM05D000003 ORTHO05D000006 5.2e-10 68.6 115 33.9
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 5.2e-10 68.6 54 55.6
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.2e-10 68.6 117 31.6
CANSAT25G3037 Cannabis sativa HOM05D000003 ORTHO05D000006 6.7e-10 68.2 111 35.1
AUR62013769 Chenopodium quinoa HOM05D000003 ORTHO05D000006 6.7e-10 68.2 117 30.8
CANSAT54G0843 Cannabis sativa HOM05D000003 ORTHO05D000006 8.8e-10 67.8 118 33.1
CANSAT64G0941 Cannabis sativa HOM05D000003 ORTHO05D000006 8.8e-10 67.8 117 33.3
Manes.07G125402 Manihot esculenta HOM05D000003 ORTHO05D000006 8.8e-10 67.8 119 34.5
CANSAT21G0732 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-09 67.4 112 33.0
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-09 67.0 115 36.5
CANSAT64G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-09 67.0 111 36.0
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 1.5e-09 67.0 113 29.2
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 2.0e-09 66.6 112 35.7
Prupe.1G178300 Prunus persica HOM05D000003 ORTHO05D000006 2.0e-09 66.6 117 36.8
Aqoxy1G02620 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.6e-09 66.2 113 36.3
AUR62025365 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.6e-09 66.2 102 33.3
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-09 65.9 115 36.5
Aqoxy2G00806 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.3e-09 65.9 113 36.3
CANSAT01G3288 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-09 65.9 126 33.3
Gohir.D05G293550 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.3e-09 65.9 118 32.2
Atru.chr6.1099 Acer truncatum HOM05D000003 ORTHO05D000006 4.4e-09 65.5 112 34.8
CANSAT13G0005 Cannabis sativa HOM05D000003 ORTHO05D000006 4.4e-09 65.5 113 34.5
CANSAT25G3782 Cannabis sativa HOM05D000003 ORTHO05D000006 4.4e-09 65.5 118 30.5
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-09 65.5 118 31.4
Gohir.A09G031322 Gossypium hirsutum HOM05D000003 ORTHO05D000006 5.7e-09 65.1 124 32.3
Psat4g166080 Pisum sativum HOM05D000003 ORTHO05D030168 5.7e-09 65.1 113 32.7
CANSAT21G0357 Cannabis sativa HOM05D000003 ORTHO05D000006 7.4e-09 64.7 125 30.4
Gohir.1Z049687 Gossypium hirsutum HOM05D000003 ORTHO05D000006 7.4e-09 64.7 109 37.6
Gohir.1Z049785 Gossypium hirsutum HOM05D000003 ORTHO05D000006 7.4e-09 64.7 119 32.8
CANSAT01G2953 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-08 63.9 119 29.4
AUR62004908 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.3e-08 63.9 65 40.0
AUR62022228 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.3e-08 63.9 130 29.2
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.3e-08 63.9 117 29.9
CANSAT11G2283 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-08 63.5 118 29.7
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-08 63.5 119 32.8
CANSAT80G2809 Cannabis sativa HOM05D000003 ORTHO05D000006 1.7e-08 63.5 104 37.5
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 1.7e-08 63.5 117 29.9
CANSAT21G2319 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-08 63.2 111 34.2
AUR62029897 Chenopodium quinoa HOM05D000003 ORTHO05D000126 2.2e-08 63.2 107 30.8
AUR62040900 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.8e-08 62.8 113 30.1
Gohir.1Z049485 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.7e-08 62.4 109 33.9
Nn3g17029 Nelumbo nucifera HOM05D000003 ORTHO05D000006 3.7e-08 62.4 112 34.8
QL04p039399 Quercus lobata HOM05D000003 ORTHO05D000126 3.7e-08 62.4 111 34.2
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 3.7e-08 62.4 117 31.6
Manes.03G024550 Manihot esculenta HOM05D000003 ORTHO05D000006 4.8e-08 62.0 111 34.2
QL05p073923 Quercus lobata HOM05D000003 ORTHO05D000006 4.8e-08 62.0 118 27.1
QL07p019949 Quercus lobata HOM05D000003 ORTHO05D000006 4.8e-08 62.0 102 30.4
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-08 61.6 117 34.2
CANSAT80G2702 Cannabis sativa HOM05D000003 ORTHO05D000006 6.3e-08 61.6 111 30.6
FvH4_6g38132 Fragaria vesca HOM05D000003 ORTHO05D000006 6.3e-08 61.6 116 32.8
Gohir.1Z049693 Gossypium hirsutum HOM05D000003 ORTHO05D000006 6.3e-08 61.6 119 29.4
Rhsim10G0112100 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.3e-08 61.6 119 34.5
CANSAT54G0319 Cannabis sativa HOM05D000003 ORTHO05D000006 8.2e-08 61.2 126 28.6
FvH4_5g06181 Fragaria vesca HOM05D000003 ORTHO05D000004 8.2e-08 61.2 108 26.9
QL04p091229 Quercus lobata HOM05D000003 ORTHO05D000006 8.2e-08 61.2 128 32.8
Rhsim09G0070000 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.2e-08 61.2 124 33.9
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 60.8 112 32.1
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 1.1e-07 60.8 117 33.3
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.8 117 31.6
Gohir.1Z049587 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.4e-07 60.5 111 29.7
Rhsim02G0107700 Rhododendron simsii HOM05D000048 ORTHO05D000006 1.4e-07 60.5 131 32.1
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.4e-07 60.5 118 30.5
Sed0027500 Sechium edule HOM05D000003 ORTHO05D000006 1.4e-07 60.5 113 32.7
TPR.G7655 Trifolium pratense HOM05D000003 ORTHO05D000004 1.4e-07 60.5 118 28.0
CANSAT01G1362 Cannabis sativa HOM05D000003 ORTHO05D000006 1.8e-07 60.1 111 31.5
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 60.1 111 32.4
CANSAT64G1387 Cannabis sativa HOM05D000003 ORTHO05D000006 1.8e-07 60.1 127 31.5
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 60.1 118 30.5
FvH4_6g16753 Fragaria vesca HOM05D000003 ORTHO05D000006 1.8e-07 60.1 128 28.1
Gohir.1Z049350 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.8e-07 60.1 110 33.6
Rhsim06G0096800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.8e-07 60.1 128 32.8
CANSAT01G0598 Cannabis sativa HOM05D000003 ORTHO05D000006 2.4e-07 59.7 128 30.5
CANSAT35G0462 Cannabis sativa HOM05D000003 ORTHO05D000006 2.4e-07 59.7 124 31.5
CANSAT56G4053 Cannabis sativa HOM05D000003 ORTHO05D000006 2.4e-07 59.7 111 32.4
Duzib187G1686 Durio zibethinus HOM05D000003 ORTHO05D000006 2.4e-07 59.7 117 29.1
Rhsim06G0043400 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.4e-07 59.7 118 30.5
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 3.1e-07 59.3 100 33.0
CANSAT01G0200 Cannabis sativa HOM05D000003 ORTHO05D000006 3.1e-07 59.3 126 28.6
CANSAT11G0900 Cannabis sativa HOM05D000003 ORTHO05D000006 3.1e-07 59.3 126 29.4
CANSAT35G1977 Cannabis sativa HOM05D000003 ORTHO05D000006 3.1e-07 59.3 127 31.5
CANSAT78G1810 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-07 59.3 134 30.6
FvH4_4g08952 Fragaria vesca HOM05D000003 ORTHO05D020382 3.1e-07 59.3 127 29.1
TAR536G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 3.1e-07 59.3 75 36.0
Aqoxy1G03976 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.1e-07 58.9 121 29.8
CANSAT01G2119 Cannabis sativa HOM05D000003 ORTHO05D000006 4.1e-07 58.9 145 29.7
CANSAT56G2946 Cannabis sativa HOM05D000003 ORTHO05D000006 4.1e-07 58.9 124 28.2
CANSAT78G0079 Cannabis sativa HOM05D000003 ORTHO05D000006 4.1e-07 58.9 130 32.3
AUR62008260 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.1e-07 58.9 58 43.1
Gohir.1Z049322 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.1e-07 58.9 110 33.6
QL01p049528 Quercus lobata HOM05D000003 ORTHO05D000126 4.1e-07 58.9 135 31.1
Rhsim02G0152800 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.1e-07 58.9 125 30.4
Rhsim03G0108700 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.1e-07 58.9 115 33.0
CANSAT11G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-07 58.5 124 28.2
CANSAT21G1426 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-07 58.5 110 32.7
Gohir.A11G238400 Gossypium hirsutum HOM05D000003 ORTHO05D000006 5.3e-07 58.5 119 31.1
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.3e-07 58.5 133 32.3
Sed0025389 Sechium edule HOM05D000003 ORTHO05D000006 5.3e-07 58.5 119 30.3
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-07 58.2 93 39.8
QL04p086004 Quercus lobata HOM05D000003 ORTHO05D000006 7.0e-07 58.2 132 28.0
Gohir.1Z049349 Gossypium hirsutum HOM05D000003 ORTHO05D000006 9.1e-07 57.8 117 28.2
Gohir.1Z049540 Gossypium hirsutum HOM05D000003 ORTHO05D000006 9.1e-07 57.8 119 27.7
Aa31LG1G5100 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.4 117 32.5
CANSAT25G1351 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 57.4 111 33.3
CANSAT78G0771 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 57.4 119 27.7
QL10p059361 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-06 57.4 122 33.6
Atru.chr3.1632 Acer truncatum HOM05D000003 ORTHO05D000006 1.6e-06 57.0 118 32.2
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.0 117 31.6
AUR62031354 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.6e-06 57.0 53 45.3
Rhsim01G0274800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.6e-06 57.0 111 28.8
AUR62022213 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.0e-06 56.6 57 38.6
Gohir.A09G000185 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.0e-06 56.6 119 26.9
Gohir.A09G031377 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.0e-06 56.6 119 29.4
QL06p020564 Quercus lobata HOM05D000003 ORTHO05D000006 2.0e-06 56.6 61 44.3
QL11p044408 Quercus lobata HOM05D000003 ORTHO05D000006 2.0e-06 56.6 119 25.2
TPR.G26705 Trifolium pratense HOM05D001177 ORTHO05D001507 2.0e-06 56.6 54 42.6
CANSAT35G1482 Cannabis sativa HOM05D000003 ORTHO05D000006 2.6e-06 56.2 124 29.8
CiPaw.02G061300 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.6e-06 56.2 103 32.0
Rhsim01G0140300 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.6e-06 56.2 106 33.0
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 2.6e-06 56.2 112 33.9
SHI30881 Sapria himalayana HOM05D000003 ORTHO05D000006 2.6e-06 56.2 115 32.2
CANSAT56G0265 Cannabis sativa HOM05D000003 ORTHO05D000006 3.5e-06 55.8 112 31.2
SHI08642 Sapria himalayana HOM05D000003 ORTHO05D000006 3.5e-06 55.8 115 32.2
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 5.9e-06 55.1 138 27.5
CANSAT11G0329 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-06 55.1 110 30.9
Gohir.A11G238433 Gossypium hirsutum HOM05D000003 ORTHO05D000006 5.9e-06 55.1 113 31.9
Aqoxy6G02225 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.7e-06 54.7 103 34.0
CANSAT54G1809 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-06 54.7 122 28.7
CiPaw.11G121200 Carya illinoinensis HOM05D000003 ORTHO05D000006 7.7e-06 54.7 82 39.0
AUR62035799 Chenopodium quinoa HOM05D000003 ORTHO05D000126 7.7e-06 54.7 57 43.9


User provided reference genes

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