Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0488721 Rosa chinensis HOM05D006811 ORTHO05D008419 8.9e-240 833.2 414 100.0
FAN23G2849 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.3e-206 723.0 425 86.1
FvH4_1g27290 Fragaria vesca HOM05D006811 ORTHO05D008419 2.1e-201 705.7 411 86.9
FAN26G0959 Fragaria x ananassa HOM05D006811 ORTHO05D008419 5.3e-184 647.9 410 81.2
MD17G1286700 Malus domestica HOM05D006811 ORTHO05D008419 4.8e-177 624.8 419 73.3
GSVIVG01035212001 Vitis vinifera HOM05D006811 ORTHO05D008419 7.4e-162 574.3 400 71.5
Peaxi162Scf00713g00019 Petunia axillaris HOM05D006811 ORTHO05D008419 1.3e-161 573.5 369 73.7
Cfa007746 Carpinus fangiana HOM05D006811 ORTHO05D008419 2.2e-161 572.8 382 73.0
Dinv28246 Davidia involucrata HOM05D006811 ORTHO05D008419 5.3e-160 568.2 417 70.0
Lalb_Chr15g0085211 Lupinus albus HOM05D006811 ORTHO05D008419 1.2e-159 567.0 401 68.3
CsaV3_4G000630 Cucumis sativus L. HOM05D006811 ORTHO05D008419 2.0e-159 566.2 395 70.1
PGSC0003DMG400016719 Solanum tuberosum HOM05D006811 ORTHO05D008419 5.9e-159 564.7 403 66.0
Potri.017G139400 Populus trichocarpa HOM05D006811 ORTHO05D008419 1.0e-158 563.9 410 68.8
ClCG10G010680 Citrullus lanatus HOM05D006811 ORTHO05D008419 1.3e-158 563.5 395 70.9
Sopen02g025910 Solanum pennellii HOM05D006811 ORTHO05D008419 1.3e-158 563.5 403 66.3
CSS0033706 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 3.8e-158 562.0 411 68.9
Lj6g0026577 Lotus japonicus HOM05D006811 ORTHO05D008419 5.0e-158 561.6 409 67.0
CiPaw.03G075800 Carya illinoinensis HOM05D006811 ORTHO05D008419 1.2e-156 557.0 425 66.8
Sabra17G0117500 Salix brachista HOM05D006811 ORTHO05D008419 2.7e-156 555.8 398 69.3
arahy.Tifrunner.gnm1.ann1.A3RENN Arachis hypogaea HOM05D006811 ORTHO05D008419 6.1e-156 554.7 401 66.8
FAN28G2567 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.0e-155 553.9 296 90.5
TAR622G1242 Trochodendron aralioides HOM05D006811 ORTHO05D008419 1.8e-155 553.1 411 68.4
Migut.K00747 Erythranthe guttata HOM05D006811 ORTHO05D008419 6.7e-155 551.2 407 65.8
Nitab4.5_0000483g0290 Nicotiana tabacum HOM05D006811 ORTHO05D008419 8.8e-155 550.8 392 68.1
Actinidia40414 Actinidia chinensis HOM05D006811 ORTHO05D008419 1.1e-154 550.4 370 71.4
Rhsim10G0185300 Rhododendron simsii HOM05D006811 ORTHO05D008419 1.5e-154 550.1 370 71.9
Hma1.2p1_0158F.1_g069620 Hydrangea macrophylla HOM05D006811 ORTHO05D008419 9.7e-154 547.4 417 67.1
CANSAT54G1721 Cannabis sativa HOM05D006811 ORTHO05D008419 2.2e-153 546.2 406 67.7
Nn4g24731 Nelumbo nucifera HOM05D006811 ORTHO05D008419 3.7e-153 545.4 371 71.2
Gorai.008G054100 Gossypium raimondii HOM05D006811 ORTHO05D008419 1.1e-152 543.9 370 69.2
Ca_17071_v3 Cicer arietinum L. HOM05D006811 ORTHO05D008419 3.1e-152 542.3 367 70.6
TPR.G26689 Trifolium pratense HOM05D006811 ORTHO05D008419 2.7e-151 539.3 399 66.2
Gohir.A12G052300 Gossypium hirsutum HOM05D006811 ORTHO05D008419 4.5e-151 538.5 370 68.9
MSTRG.15636 Avicennia marina HOM05D006811 ORTHO05D008419 5.9e-151 538.1 396 65.2
Medtr3g064600 Medicago truncatula HOM05D006811 ORTHO05D008419 2.9e-150 535.8 399 66.4
Glyma.18G043800 Glycine max HOM05D006811 ORTHO05D008419 1.9e-149 533.1 399 65.4
Eucgr.F02911 Eucalyptus grandis HOM05D006811 ORTHO05D008419 2.5e-149 532.7 413 66.1
Hund22201 Selenicereus undatus HOM05D006811 ORTHO05D008419 5.5e-149 531.6 400 65.2
Aqoxy3G04154 Aquilegia oxysepala HOM05D006811 ORTHO05D008419 1.6e-148 530.0 420 64.5
Glyma.11G212500 Glycine max HOM05D006811 ORTHO05D008419 2.7e-148 529.3 399 64.4
Thecc.04G060000 Theobroma cacao HOM05D006811 ORTHO05D008419 2.7e-148 529.3 403 64.5
SalBow5G0387 Salvia bowleyana HOM05D006811 ORTHO05D008419 4.7e-148 528.5 371 67.9
VMungo0540G2025 Vigna mungo HOM05D006811 ORTHO05D008419 1.4e-147 526.9 396 65.2
SalBow5G5201 Salvia bowleyana HOM05D006811 ORTHO05D008419 3.0e-147 525.8 371 67.4
Cc07_g12750 Coffea canephora HOM05D006811 ORTHO05D008419 4.0e-147 525.4 415 62.7
Aa31LG2G2700 Aethionema arabicum HOM05D006811 ORTHO05D008419 8.8e-147 524.2 373 66.2
Carub.0002s1184 Capsella rubella HOM05D006811 ORTHO05D008419 1.2e-146 523.9 402 64.7
Nitab4.5_0008137g0060 Nicotiana tabacum HOM05D006811 ORTHO05D008419 2.0e-146 523.1 431 61.9
Psat5g142440 Pisum sativum HOM05D006811 ORTHO05D008419 9.8e-146 520.8 398 64.6
AT1G65900 Arabidopsis thaliana HOM05D006811 ORTHO05D008419 1.3e-145 520.4 400 64.2
Ciclev10013413m.g Citrus clementina HOM05D006811 ORTHO05D008419 6.3e-145 518.1 409 65.5
Lsat_1_v5_gn_2_71780 Lactuca sativa HOM05D006811 ORTHO05D008419 6.3e-145 518.1 391 63.4
DCAR_020444 Daucus carota HOM05D006811 ORTHO05D008419 2.4e-144 516.2 384 66.1
AL2G23270 Arabidopsis lyrata HOM05D006811 ORTHO05D008419 3.1e-144 515.8 402 63.9
Sp5g20950 Schrenkiella parvula HOM05D006811 ORTHO05D008419 4.1e-144 515.4 400 64.0
CARHR057790 Cardamine hirsuta HOM05D006811 ORTHO05D008419 5.4e-144 515.0 399 63.9
Thhalv10018647m.g Eutrema salsugineum HOM05D006811 ORTHO05D008419 7.7e-143 511.1 397 63.5
EL10Ac4g08932 Beta vulgaris HOM05D006811 ORTHO05D008419 1.0e-142 510.8 419 60.4
Sc06g0003070 Simmondsia chinensis HOM05D006811 ORTHO05D008419 3.2e-141 505.8 402 61.4
PGR004G2199 Punica granatum HOM05D006811 ORTHO05D008419 5.5e-141 505.0 373 67.3
BcaB03g15309 Brassica carinata HOM05D006811 ORTHO05D008419 1.6e-140 503.4 381 65.6
HanXRQChr14g0443391 Helianthus annuus HOM05D006811 ORTHO05D008419 1.4e-139 500.4 399 60.9
A07p33010 Brassica napus HOM05D006811 ORTHO05D008419 3.0e-139 499.2 399 63.9
BraA07t30929Z Brassica rapa HOM05D006811 ORTHO05D008419 3.0e-139 499.2 399 63.9
C06p39240 Brassica napus HOM05D006811 ORTHO05D008419 5.2e-139 498.4 399 63.7
TWI53G0648 Tripterygium wilfordii HOM05D006811 ORTHO05D008419 1.3e-137 493.8 335 69.9
BcaC08g46096 Brassica carinata HOM05D006811 ORTHO05D008419 1.7e-137 493.4 374 66.6
THA.LOC104825578 Tarenaya hassleriana HOM05D006811 ORTHO05D008419 3.7e-137 492.3 360 65.3
PSO063G4300 Papaver somniferum HOM05D006811 ORTHO05D008419 6.3e-137 491.5 392 63.3
QL02p064229 Quercus lobata HOM05D006811 ORTHO05D008419 8.3e-137 491.1 459 56.4
BolC6t39018H Brassica oleracea HOM05D006811 ORTHO05D008419 1.0e-134 484.2 436 58.3
unitig_0.g2638 Utricularia gibba HOM05D006811 ORTHO05D008419 2.9e-134 482.6 397 61.0
HanXRQChr12g0365711 Helianthus annuus HOM05D006811 ORTHO05D008419 4.7e-132 475.3 391 60.1
CDE05G3344 Ceratophyllum demersum HOM05D006811 ORTHO05D008419 4.4e-130 468.8 370 61.4
Duzib138G1484 Durio zibethinus HOM05D006811 ORTHO05D008419 9.8e-130 467.6 407 59.7
ATR0807G007 Amborella trichopoda HOM05D006811 ORTHO05D008419 1.1e-128 464.2 372 60.8
Manes.02G081300 Manihot esculenta HOM05D006811 ORTHO05D008419 5.0e-126 455.3 297 70.7
Lj4A251G58 Lonicera japonica HOM05D006811 ORTHO05D008419 6.6e-126 454.9 445 54.6
vmacro20465 Vaccinium macrocarpon HOM05D006811 ORTHO05D008419 1.0e-123 447.6 342 65.8
AUR62003402 Chenopodium quinoa HOM05D006811 ORTHO05D008419 3.4e-122 442.6 422 55.0
AUR62004775 Chenopodium quinoa HOM05D006811 ORTHO05D008419 2.2e-121 439.9 398 56.8
Sed0027023 Sechium edule HOM05D006811 ORTHO05D008419 9.2e-120 434.5 297 69.0
Atru.chr1.2130 Acer truncatum HOM05D006811 ORTHO05D008419 1.9e-117 426.8 288 70.1
Phvul.006G087200 Phaseolus vulgaris HOM05D006811 ORTHO05D008419 9.8e-114 414.5 296 65.5
SGA_v2.0_scaffold115G32048 Striga asiatica HOM05D006811 ORTHO05D008419 3.7e-113 412.5 285 66.7
ECA238G0794 Erigeron canadensis HOM05D006811 ORTHO05D008419 2.4e-112 409.8 382 54.2
Prupe.3G014300 Prunus persica HOM05D006811 ORTHO05D008419 2.3e-107 393.3 230 81.3
Haze_14327 Corylus avellana HOM05D006811 ORTHO05D008419 5.6e-101 372.1 301 65.4
HPP92_014601 Vanilla planifolia HOM05D006811 ORTHO05D008419 2.7e-95 353.2 295 54.2
MELO3C017973.2 Cucumis melo HOM05D006811 ORTHO05D008419 2.1e-84 317.0 242 65.3
Zm00001eb001500 Zea mays HOM05D006811 ORTHO05D008419 2.4e-83 313.5 278 55.0
Gohir.D12G050800 Gossypium hirsutum HOM05D006811 ORTHO05D008419 4.0e-83 312.8 215 67.9
Ah.06g191630 Amaranthus hybridus HOM05D006811 ORTHO05D008419 4.5e-82 309.3 382 45.3
Cpa.g.sc178.33 Carica papaya HOM05D006811 ORTHO05D008419 2.9e-81 306.6 250 60.4
DCAR_017976 Daucus carota HOM05D006811 ORTHO05D008419 1.2e-71 274.6 215 61.9
AagrBONN_evm.TU.Sc2ySwM_368.3231 Anthoceros agrestis HOM05D006811 ORTHO05D008419 3.4e-66 256.5 379 38.8
FAN19G2462 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.1e-61 241.5 140 82.9
PSO782G1785 Papaver somniferum HOM05D006811 ORTHO05D008419 1.5e-61 241.1 203 59.1
arahy.Tifrunner.gnm1.ann1.JYBV0C Arachis hypogaea HOM05D006811 ORTHO05D008419 3.1e-59 233.4 180 63.9
CSS0020523 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 1.9e-56 224.2 157 70.7
FAN28G1678 Fragaria x ananassa HOM05D006811 ORTHO05D008419 3.0e-46 190.3 116 87.1
CSS0043986 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 1.8e-43 181.0 147 61.9
CBR_g31433 Chara braunii HOM05D006811 ORTHO05D008419 7.7e-42 175.6 395 32.2
HPP92_014605 Vanilla planifolia HOM05D006811 ORTHO05D008419 2.4e-35 154.1 136 49.3
FAN28G2576 Fragaria x ananassa HOM05D006811 ORTHO05D008419 4.8e-28 129.8 88 73.9
Medtr3g073800 Medicago truncatula HOM05D006811 ORTHO05D008419 5.9e-26 122.9 100 63.0
Os03g0120000 Oryza sativa ssp. japonica HOM05D006811 ORTHO05D008419 2.3e-22 110.9 75 70.7
Cre02.g081050 Chlamydomonas reinhardtii HOM05D006811 ORTHO05D008419 3.0e-22 110.5 424 26.2
Aa31LG2G2690 Aethionema arabicum HOM05D000356 ORTHO05D000265 6.3e-20 102.8 96 51.0
MCO05G199 Micromonas commoda HOM05D006811 ORTHO05D008419 2.0e-18 97.8 405 27.2
PRCOL_00005605 Prasinoderma coloniale HOM05D006811 ORTHO05D008419 1.0e-17 95.5 384 26.6
A02p12460 Brassica napus HOM05D006811 ORTHO05D008419 3.3e-16 90.5 91 48.4
PRCOL_00004838 Prasinoderma coloniale HOM05D006811 ORTHO05D008419 7.3e-16 89.4 378 24.9
COL.COLO4_03698 Corchorus olitorius HOM05D006811 ORTHO05D008419 1.2e-13 82.0 68 60.3
SEGI_23786 Sequoiadendron giganteum HOM05D006811 ORTHO05D008419 1.6e-10 71.6 67 50.7
arahy.Tifrunner.gnm1.ann1.XFK461 Arachis hypogaea HOM05D006811 ORTHO05D008419 4.6e-10 70.1 67 55.2
SEGI_18554 Sequoiadendron giganteum HOM05D006811 ORTHO05D008419 5.0e-09 66.6 72 38.9


User provided reference genes

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