Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 2.6e-289 998.0 524 100.0
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.2e-265 919.5 526 92.2
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.0e-264 914.1 540 89.8
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.7e-259 897.9 526 90.9
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.0e-256 889.8 526 89.7
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.0e-256 887.5 526 89.5
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 8.3e-243 843.6 518 85.7
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 3.2e-242 841.6 518 84.7
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.7e-235 818.1 523 80.3
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 6.4e-235 817.4 518 82.4
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 7.1e-234 813.9 523 80.5
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 9.2e-234 813.5 516 80.6
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.6e-233 812.8 516 81.8
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.6e-233 812.8 515 81.2
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 3.5e-233 811.6 518 79.9
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 4.6e-233 811.2 523 79.7
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.0e-232 810.1 540 78.7
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 1.7e-232 809.3 529 80.0
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.1e-231 806.6 523 79.7
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.5e-231 806.2 498 82.9
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.9e-231 805.8 531 79.1
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 3.3e-231 805.1 523 79.5
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 4.3e-231 804.7 499 81.8
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 5.6e-231 804.3 544 78.1
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.6e-230 802.7 510 82.4
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 3.6e-230 801.6 532 78.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 8.1e-230 800.4 521 78.3
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.8e-229 799.3 517 78.9
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.6e-228 795.4 521 78.7
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 5.8e-228 794.3 504 80.6
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 7.6e-228 793.9 516 79.3
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 2.9e-227 792.0 515 78.8
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 6.4e-227 790.8 517 78.7
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.1e-226 790.0 499 80.6
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.1e-226 790.0 512 80.5
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 1.1e-226 790.0 515 78.8
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.9e-226 789.3 529 77.3
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-226 788.9 517 78.3
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 4.1e-226 788.1 532 77.8
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 5.4e-226 787.7 511 79.1
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 9.2e-226 786.9 502 79.9
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 2.1e-225 785.8 516 78.3
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 5.1e-224 781.2 499 79.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 2.5e-223 778.9 501 80.0
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.7e-222 774.6 513 77.0
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.7e-219 766.1 521 77.9
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.8e-219 765.0 499 78.2
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 6.4e-219 764.2 500 78.2
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 8.4e-219 763.8 500 78.2
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.1e-218 763.5 502 77.7
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 2.4e-218 762.3 500 78.0
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 3.2e-218 761.9 502 77.3
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 4.2e-218 761.5 500 76.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.6e-217 759.6 532 74.4
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 7.8e-217 757.3 502 76.9
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.0e-216 756.9 504 76.4
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 2.3e-216 755.7 499 77.0
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 4.3e-215 751.5 533 73.5
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 7.3e-215 750.7 522 73.4
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.6e-214 749.6 500 76.6
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 2.8e-214 748.8 515 76.9
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.8e-213 746.1 502 76.7
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.2e-212 743.4 516 75.4
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 2.6e-212 742.3 511 77.7
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.3e-211 740.0 521 73.7
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 1.3e-211 740.0 513 74.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 1.7e-211 739.6 510 74.7
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.7e-211 739.6 516 74.2
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 2.2e-211 739.2 503 75.0
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 6.4e-211 737.6 525 72.6
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 7.9e-209 730.7 534 72.7
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 5.1e-208 728.0 505 74.7
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 6.7e-208 727.6 595 66.6
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.5e-207 725.7 519 72.8
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.6e-206 723.0 500 75.2
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.4e-205 719.2 520 73.5
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.1e-205 718.8 501 74.9
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 2.6e-204 715.7 505 75.0
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 3.4e-204 715.3 517 71.4
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 7.1e-202 707.6 608 64.5
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 7.1e-202 707.6 461 79.2
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 7.9e-201 704.1 532 71.1
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.1e-199 700.3 517 71.2
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 4.5e-188 661.8 499 67.1
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 7.6e-188 661.0 489 70.1
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.3e-187 660.2 515 67.2
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 3.8e-187 658.7 520 68.7
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 1.4e-186 656.8 516 66.1
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 4.2e-186 655.2 591 62.3
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 7.9e-185 651.0 499 69.3
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.5e-183 646.0 557 63.6
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 6.5e-179 631.3 531 62.1
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 6.5e-179 631.3 531 62.1
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.5e-178 629.4 424 76.4
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 5.7e-175 618.2 454 72.7
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 6.1e-169 598.2 447 68.2
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.3e-163 580.5 436 70.0
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 2.0e-159 566.6 485 61.0
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 4.8e-158 562.0 517 56.9
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 3.1e-157 559.3 397 72.5
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 8.3e-150 534.6 356 75.3
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 1.3e-147 527.3 364 77.7
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 3.4e-143 512.7 385 70.9
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 3.0e-136 489.6 328 76.2
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 3.7e-126 456.1 323 72.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 9.5e-114 414.8 248 81.9
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.8e-113 413.3 248 82.3
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 2.4e-109 400.2 499 45.3
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 5.6e-106 389.0 447 54.8
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 7.6e-103 378.6 497 44.7
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 7.3e-98 362.1 240 75.0
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 5.3e-88 329.3 484 40.9
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 4.1e-72 276.6 172 78.5
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.5e-71 273.1 219 65.8
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 5.2e-51 206.5 198 58.1
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.7e-49 201.4 118 85.6
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-49 201.4 493 33.3
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.0e-46 192.2 477 34.6
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.2e-44 185.3 499 32.7
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-37 162.2 290 40.3
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.5e-37 161.8 115 74.8
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 2.3e-35 154.5 467 32.3
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-34 150.2 490 31.0
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-32 145.2 452 31.4
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 3.6e-28 130.6 284 37.7
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-28 130.2 284 37.3
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 6.1e-28 129.8 86 73.3
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 5.2e-27 126.7 331 34.4
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-26 122.9 302 32.8
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.4e-24 116.7 194 41.8
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-23 115.5 222 39.2
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 6.6e-22 109.8 354 31.6
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 6.6e-22 109.8 158 41.8
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.6e-20 105.1 74 63.5
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-20 104.8 158 40.5
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 6.1e-20 103.2 275 30.5
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 8.0e-20 102.8 210 38.1
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-19 101.3 208 38.5
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.0e-18 98.2 63 71.4
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 3.4e-18 97.4 384 30.7
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 3.4e-18 97.4 358 29.3
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 7.5e-18 96.3 239 31.0
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.1e-16 92.4 399 29.8
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 6.2e-12 76.6 326 28.2
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.4e-10 70.9 288 29.5
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-10 69.7 141 37.6
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 1.7e-09 68.6 34 91.2
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 2.3e-06 58.2 48 60.4
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 3.9e-06 57.4 45 62.2


User provided reference genes

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