Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0487681 Rosa chinensis HOM05D017210 ORTHO05D019186 1.2e-175 619.8 330 100.0
RcHm_v2.0_Chr3g0469671 Rosa chinensis HOM05D017210 ORTHO05D019186 2.4e-86 323.2 297 59.6
FAN02G2280 Fragaria x ananassa HOM05D017210 ORTHO05D019186 1.8e-78 297.0 294 54.8
FAN05G5824 Fragaria x ananassa HOM05D017210 ORTHO05D019186 5.3e-78 295.4 294 54.4
FvH4_6g15970 Fragaria vesca HOM05D017210 ORTHO05D019186 4.5e-77 292.4 296 54.1
FAN14G0387 Fragaria x ananassa HOM05D017210 ORTHO05D019186 2.9e-76 289.7 296 53.7
FAN09G0879 Fragaria x ananassa HOM05D017210 ORTHO05D019186 3.1e-70 269.6 286 53.1
RcHm_v2.0_Chr4g0407791 Rosa chinensis HOM05D017210 ORTHO05D019186 3.6e-66 256.1 293 49.1
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 4.7e-26 122.9 310 35.2
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 2.9e-23 113.6 325 35.7
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 5.4e-22 109.4 312 34.6
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 4.3e-19 99.8 313 31.3
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.8e-17 94.4 311 34.1
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 5.2e-17 92.8 309 31.4
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.2e-16 91.7 299 30.8
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.5e-16 91.3 315 32.7
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 1.5e-16 91.3 310 31.0
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.5e-16 91.3 299 30.8
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 2.0e-16 90.9 310 32.6
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 7.6e-16 89.0 312 29.5
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.7e-15 87.8 319 32.3
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 2.9e-15 87.0 306 31.0
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 2.9e-15 87.0 301 32.6
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.9e-15 87.0 299 32.1
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 8.4e-15 85.5 293 32.4
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 9.2e-14 82.0 304 29.3
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.6e-13 81.3 313 30.4
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.6e-13 81.3 307 32.6
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 7.8e-13 79.0 316 31.0
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 7.8e-13 79.0 305 31.1
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.7e-12 77.8 304 28.6
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.7e-12 77.8 304 31.6
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 1.7e-12 77.8 308 28.9
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.3e-12 77.4 299 30.4
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.3e-12 77.4 307 28.0
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 3.0e-12 77.0 294 29.3
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 3.0e-12 77.0 294 29.3
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.0e-12 77.0 294 29.6
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 3.0e-12 77.0 301 29.6
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.0e-12 77.0 306 29.4
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 3.9e-12 76.6 287 27.9
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 3.9e-12 76.6 308 29.2
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.9e-12 76.6 321 27.7
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 5.1e-12 76.3 312 28.8
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 5.1e-12 76.3 299 28.4
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 6.6e-12 75.9 302 30.5
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 6.6e-12 75.9 297 30.3
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 8.6e-12 75.5 299 29.8
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 8.6e-12 75.5 319 27.0
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 1.1e-11 75.1 308 28.6
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.5e-11 74.7 309 29.8
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.9e-11 74.3 312 27.2
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 2.5e-11 73.9 324 27.8
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 3.3e-11 73.6 311 29.9
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 9.6e-11 72.0 310 28.4
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.2e-10 71.6 294 29.6
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 1.6e-10 71.2 307 29.3
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.6e-10 70.1 299 28.4
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 4.7e-10 69.7 304 28.6
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 4.7e-10 69.7 306 28.4
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 4.7e-10 69.7 312 29.2
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 4.7e-10 69.7 312 29.2
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 6.2e-10 69.3 310 29.0
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 1.1e-09 68.6 286 28.3
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.4e-09 68.2 322 32.3
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 2.4e-09 67.4 313 26.5
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.1e-09 67.0 316 28.5
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 3.1e-09 67.0 285 31.2
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 8.9e-09 65.5 312 30.1
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.2e-08 65.1 317 27.8
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.2e-08 65.1 292 27.4
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 1.2e-08 65.1 314 26.8
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 1.5e-08 64.7 313 28.4
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-08 64.7 300 27.7
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 2.0e-08 64.3 299 30.1
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 2.6e-08 63.9 314 28.7
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 3.4e-08 63.5 278 29.5
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 3.4e-08 63.5 297 29.6
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 4.4e-08 63.2 291 28.2
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 5.8e-08 62.8 304 27.6
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 5.8e-08 62.8 301 29.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 7.6e-08 62.4 310 28.7
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 7.6e-08 62.4 289 28.4
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 9.9e-08 62.0 303 27.7
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 9.9e-08 62.0 305 30.2
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 9.9e-08 62.0 292 27.1
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 1.3e-07 61.6 126 33.3
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.7e-07 61.2 243 29.6
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 2.2e-07 60.8 179 35.2
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.2e-07 60.8 308 30.5
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 3.8e-07 60.1 239 31.8
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 3.8e-07 60.1 283 27.6
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 4.9e-07 59.7 286 28.7
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 6.4e-07 59.3 290 29.3
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 1.4e-06 58.2 302 26.5
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.4e-06 58.2 318 28.0
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.4e-06 58.2 212 30.7
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.9e-06 57.8 289 28.4
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.9e-06 57.8 244 28.3
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 3.2e-06 57.0 324 27.5
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 4.2e-06 56.6 304 27.6
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 4.2e-06 56.6 256 30.1
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 5.4e-06 56.2 306 28.4
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 5.4e-06 56.2 312 26.9
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 5.4e-06 56.2 298 27.2
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 7.1e-06 55.8 274 28.8
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 7.1e-06 55.8 318 29.6
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 9.3e-06 55.5 319 25.4


User provided reference genes

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