Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 0.0e+00 1124.8 651 100.0
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.9e-206 721.5 682 63.0
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 3.2e-204 715.7 685 63.4
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.9e-200 701.8 697 61.8
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.0e-181 641.0 692 54.2
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 4.1e-175 619.0 686 55.2
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 3.2e-135 486.5 728 44.0
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 2.1e-134 483.8 730 45.9
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.7e-115 421.0 664 41.7
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.4e-114 417.9 706 41.5
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.8e-114 417.5 712 42.8
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 6.9e-114 415.6 663 41.5
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 1.9e-111 407.5 689 40.1
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 2.1e-110 404.1 670 40.0
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.1e-108 398.3 716 38.7
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 3.3e-108 396.7 659 39.5
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 1.3e-107 394.8 685 38.7
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 2.8e-107 393.7 701 38.5
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 2.8e-107 393.7 673 39.5
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.2e-105 388.3 706 38.1
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 4.5e-105 386.3 665 39.8
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 2.9e-104 383.6 689 40.2
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 5.0e-104 382.9 713 36.7
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 6.5e-104 382.5 712 37.4
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.5e-103 381.3 694 37.9
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 4.2e-103 379.8 668 38.9
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 7.2e-103 379.0 638 42.8
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 9.4e-103 378.6 658 38.9
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.6e-102 376.7 535 49.3
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 8.0e-102 375.6 658 38.8
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.0e-101 375.2 666 38.1
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 4.4e-100 369.8 711 38.1
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.7e-99 366.7 743 36.7
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 5.3e-98 362.8 657 40.0
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 9.1e-98 362.1 668 38.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 7.7e-97 359.0 649 38.5
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 1.5e-95 354.8 660 37.7
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 5.5e-95 352.8 723 34.2
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.2e-94 351.7 660 37.4
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 6.1e-94 349.4 703 36.8
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 6.8e-93 345.9 737 35.3
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.0e-92 344.4 360 60.0
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 2.0e-92 344.4 713 37.0
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 9.8e-92 342.0 665 36.8
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 1.7e-91 341.3 665 36.5
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 5.4e-90 336.3 686 35.3
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 5.4e-90 336.3 700 35.7
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 5.4e-90 336.3 709 37.1
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 9.1e-90 335.5 673 39.1
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.6e-89 334.7 708 36.9
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.6e-89 334.7 708 36.9
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 2.7e-89 334.0 745 34.2
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 7.7e-89 332.4 693 36.1
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.0e-88 332.0 718 35.8
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.3e-88 330.9 667 36.3
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 3.8e-88 330.1 711 34.5
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 8.6e-88 328.9 714 35.9
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 5.5e-87 326.2 657 35.6
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 4.7e-86 323.2 710 35.8
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 3.4e-84 317.0 711 35.3
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 9.8e-84 315.5 608 36.0
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 2.8e-83 313.9 597 36.2
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 5.4e-82 309.7 645 35.3
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 9.2e-82 308.9 662 35.0
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.0e-81 307.8 667 36.6
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 5.0e-80 303.1 672 35.1
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 6.6e-80 302.8 683 35.0
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 6.6e-80 302.8 665 35.0
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.5e-79 300.8 434 44.0
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 3.6e-78 297.0 704 34.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.7e-75 288.1 622 33.8
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 8.3e-75 285.8 480 40.2
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 6.0e-73 279.6 557 36.3
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 6.8e-69 266.2 728 32.3
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.4e-68 263.8 312 53.5
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.3e-67 261.9 727 32.0
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.1e-66 258.8 734 31.1
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.6e-65 253.4 746 31.1
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 3.0e-64 250.8 569 36.9
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 3.9e-64 250.4 668 29.6
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 8.6e-64 249.2 616 33.0
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.1e-63 248.8 564 37.1
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.5e-63 248.4 728 31.2
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.5e-63 247.7 654 32.4
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 2.5e-63 247.7 660 32.1
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 7.3e-63 246.1 677 28.8
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 7.3e-63 246.1 667 32.4
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.6e-62 245.0 650 30.9
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.4e-61 241.9 607 33.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.1e-61 240.7 563 35.0
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 2.9e-59 234.2 458 37.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 4.1e-58 230.3 701 30.4
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 2.7e-57 227.6 706 28.2
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.0e-56 225.7 439 36.2
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 3.9e-56 223.8 669 28.6
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.8e-53 214.9 438 38.6
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 8.9e-53 212.6 639 32.7
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.2e-52 212.2 303 46.9
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 3.2e-50 204.1 667 29.2
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 2.1e-46 191.4 627 29.3
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 5.4e-42 176.8 385 35.3
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 3.0e-40 171.0 354 37.9
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.9e-34 151.8 302 37.1
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.4e-29 134.8 440 29.1
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.1e-22 111.7 310 29.7
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 3.7e-22 110.9 668 22.3
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 8.2e-22 109.8 427 25.1
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 2.0e-20 105.1 422 26.1
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 4.6e-17 94.0 93 48.4
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 4.6e-17 94.0 330 25.2
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.2e-14 85.1 94 42.6
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 6.9e-13 80.1 86 50.0
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.2e-09 69.3 367 23.7
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 6.1e-09 67.0 58 53.4
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.9e-08 64.3 172 31.4


User provided reference genes

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