Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 6.8e-265 916.8 463 100.0
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.3e-243 844.7 463 91.6
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.6e-242 842.4 463 91.4
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.4e-241 838.6 463 90.7
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 6.9e-241 837.0 463 90.9
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 9.9e-240 833.2 463 90.5
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-238 829.7 463 90.3
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 1.8e-228 795.8 465 86.9
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 3.0e-228 795.0 465 86.7
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 5.0e-223 777.7 467 85.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.5e-200 703.0 470 77.0
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 2.9e-199 698.7 466 76.6
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.9e-198 696.0 465 76.1
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 3.0e-196 688.7 466 74.9
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 5.7e-195 684.5 467 75.4
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.8e-194 682.2 468 75.6
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.7e-194 681.8 465 74.6
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.8e-193 679.5 496 72.4
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 5.9e-192 674.5 465 75.1
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.1e-190 670.2 465 73.5
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 3.2e-190 668.7 467 73.7
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 8.8e-188 660.6 469 74.4
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.8e-186 655.6 466 73.4
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 3.7e-186 655.2 429 78.8
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.6e-184 649.8 466 73.2
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 2.0e-184 649.4 466 72.5
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 4.5e-184 648.3 464 73.1
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.5e-182 643.3 467 72.4
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.9e-182 642.9 468 72.9
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.2e-182 642.1 465 70.8
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 8.8e-180 634.0 492 69.1
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.2e-179 633.6 466 69.5
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 3.4e-179 632.1 466 70.6
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 7.5e-179 630.9 465 71.2
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.8e-178 629.0 468 71.6
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.1e-177 627.1 469 71.0
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.7e-176 622.5 465 69.5
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 5.9e-176 621.3 467 68.7
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 2.9e-175 619.0 469 70.8
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.1e-174 617.1 465 68.2
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.5e-174 615.9 467 69.8
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 4.3e-174 615.1 487 66.5
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 6.1e-173 611.3 468 68.4
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.0e-172 610.5 468 68.2
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.4e-172 610.1 489 67.1
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 4.0e-172 608.6 468 68.2
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.0e-172 608.6 466 69.1
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.4e-169 599.4 470 67.4
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.7e-168 595.9 522 62.3
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 2.3e-167 592.8 487 64.3
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 6.6e-167 591.3 466 67.0
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.1e-166 590.5 474 67.1
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 8.0e-165 584.3 466 65.2
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.0e-164 583.9 479 65.1
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.6e-163 579.3 532 62.0
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 4.4e-163 578.6 496 62.9
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 5.8e-163 578.2 508 64.0
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.7e-162 576.6 507 60.9
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.5e-160 568.9 504 61.7
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.0e-159 565.8 476 64.3
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.6e-157 560.1 469 65.2
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 2.1e-157 559.7 479 63.7
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 3.6e-157 558.9 435 69.2
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.4e-153 547.0 497 61.0
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.6e-152 543.5 466 63.5
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.7e-151 540.0 490 61.2
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.6e-149 533.5 481 62.4
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.4e-148 530.4 502 56.8
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 1.8e-148 530.0 473 61.1
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.7e-146 522.3 462 62.1
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 4.6e-144 515.4 472 63.6
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 3.0e-143 512.7 477 62.3
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 6.6e-143 511.5 464 61.6
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.9e-142 510.0 477 62.1
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 2.5e-142 509.6 547 57.4
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 5.6e-142 508.4 477 59.1
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 2.8e-141 506.1 516 56.4
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 6.2e-141 505.0 476 61.1
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.1e-140 504.2 490 58.8
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.4e-140 503.1 468 59.2
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 2.4e-140 503.1 547 56.9
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 5.2e-140 501.9 478 61.3
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 8.9e-140 501.1 476 60.5
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.7e-138 496.9 484 59.5
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.4e-137 493.8 366 71.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.7e-136 489.6 482 57.5
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.0e-135 486.1 419 63.5
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 3.9e-135 485.7 479 59.7
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.5e-134 483.8 350 70.3
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.9e-134 483.4 350 70.9
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 3.6e-133 479.2 489 58.1
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.3e-132 475.3 534 52.2
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 4.4e-131 472.2 486 57.2
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 1.4e-129 467.2 510 55.3
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 5.4e-129 465.3 440 61.1
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 9.3e-129 464.5 486 56.4
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 2.7e-128 463.0 553 51.2
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.0e-127 461.1 479 59.7
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 3.0e-127 459.5 555 50.1
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 3.9e-127 459.1 475 56.0
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.5e-126 457.2 487 56.5
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.5e-118 429.9 519 50.9
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.3e-118 429.5 515 50.9
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.3e-117 427.6 317 69.1
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.0e-114 417.9 308 70.5
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 3.5e-112 409.5 450 52.7
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.1e-94 351.3 258 73.6
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.9e-81 307.4 355 49.0
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.8e-76 290.8 215 68.4
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.7e-69 267.7 221 66.5
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.8e-69 266.2 174 73.0
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.4e-68 263.8 221 65.6
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 7.0e-68 262.3 254 59.1
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 9.1e-68 261.9 269 56.1
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 2.5e-65 253.8 220 64.5
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 2.3e-63 247.3 426 39.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.4e-54 216.9 489 34.8
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.9e-53 213.0 463 33.5
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.4e-52 210.7 366 40.2
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.0e-47 195.3 432 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.8e-47 194.5 443 36.3
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 9.5e-41 172.2 180 52.8
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 8.1e-40 169.1 415 34.7
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 4.1e-36 156.8 164 54.3
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.1e-35 154.5 439 31.4
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 8.6e-34 149.1 106 74.5
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.1e-32 144.4 137 58.4
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 8.9e-31 139.0 505 29.5
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.5e-27 127.1 115 56.5
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 9.6e-25 119.0 458 28.2
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.1e-19 101.3 81 65.4
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 4.6e-11 73.6 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.8e-08 63.5 91 49.5
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 5.8e-06 56.6 51 54.9
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 5.8e-06 56.6 51 54.9


User provided reference genes

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