Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0487171 Rosa chinensis HOM05D006535 ORTHO05D008548 2.4e-87 325.5 164 100.0
RcHm_v2.0_Chr5g0002321 Rosa chinensis HOM05D006535 ORTHO05D008548 7.2e-52 207.6 133 79.7
FvH4_3g01470 Fragaria vesca HOM05D006535 ORTHO05D008548 1.0e-50 203.8 133 78.2
FAN21G0938 Fragaria x ananassa HOM05D006535 ORTHO05D008548 3.5e-46 188.7 105 91.4
FAN25G2414 Fragaria x ananassa HOM05D006535 ORTHO05D008548 1.0e-45 187.2 104 91.3
Prupe.4G015900 Prunus persica HOM05D006535 ORTHO05D008548 1.0e-45 187.2 133 71.4
Prupe.I000100 Prunus persica HOM05D006535 ORTHO05D008548 1.0e-45 187.2 133 71.4
MD05G1351700 Malus domestica HOM05D006535 ORTHO05D008548 1.4e-42 176.8 134 70.9
Cfa000168 Carpinus fangiana HOM05D006535 ORTHO05D008548 7.5e-41 171.0 133 66.9
Gohir.D10G010800 Gossypium hirsutum HOM05D006535 ORTHO05D008548 4.9e-40 168.3 133 65.4
Gorai.011G011900 Gossypium raimondii HOM05D006535 ORTHO05D008548 8.3e-40 167.5 133 64.7
Haze_06851 Corylus avellana HOM05D006535 ORTHO05D008548 1.4e-39 166.8 133 64.7
CiPaw.09G097300 Carya illinoinensis HOM05D006535 ORTHO05D008548 5.4e-39 164.9 133 64.7
Ciclev10015047m.g Citrus clementina HOM05D006535 ORTHO05D008548 3.5e-38 162.2 133 63.9
QL05p072061 Quercus lobata HOM05D006535 ORTHO05D008548 1.7e-37 159.8 133 63.2
Gohir.A10G011200 Gossypium hirsutum HOM05D006535 ORTHO05D008548 3.0e-37 159.1 133 62.4
Duzib235G1465 Durio zibethinus HOM05D006535 ORTHO05D008548 5.0e-37 158.3 133 62.4
Thecc.06G227200 Theobroma cacao HOM05D006535 ORTHO05D008548 6.6e-37 157.9 133 60.2
TWI38G0380 Tripterygium wilfordii HOM05D006535 ORTHO05D008548 1.5e-36 156.8 151 57.0
COL.COLO4_37574 Corchorus olitorius HOM05D006535 ORTHO05D008548 5.6e-36 154.8 133 58.6
Aqoxy1G03005 Aquilegia oxysepala HOM05D006535 ORTHO05D008548 1.6e-35 153.3 135 62.2
TAR626G0131 Trochodendron aralioides HOM05D006535 ORTHO05D008548 2.1e-35 152.9 135 62.2
GSVIVG01012659001 Vitis vinifera HOM05D006535 ORTHO05D008548 4.7e-35 151.8 135 63.0
ClCG01G009650 Citrullus lanatus HOM05D006535 ORTHO05D008548 8.0e-35 151.0 133 59.4
CANSAT56G3727 Cannabis sativa HOM05D006535 ORTHO05D008548 1.1e-34 150.6 133 61.7
Nn1g07251 Nelumbo nucifera HOM05D006535 ORTHO05D008548 1.4e-34 150.2 135 60.0
CsaV3_1G046130 Cucumis sativus L. HOM05D006535 ORTHO05D008548 6.8e-34 147.9 150 52.0
Potri.011G010400 Populus trichocarpa HOM05D006535 ORTHO05D008548 6.8e-34 147.9 133 60.9
PGR042G2820 Punica granatum HOM05D006535 ORTHO05D008548 8.9e-34 147.5 133 59.4
Potri.004G005500 Populus trichocarpa HOM05D006535 ORTHO05D008548 2.0e-33 146.4 133 59.4
Eucgr.E03992 Eucalyptus grandis HOM05D006535 ORTHO05D008548 5.8e-33 144.8 133 59.4
MELO3C021729.2 Cucumis melo HOM05D006535 ORTHO05D008548 9.8e-33 144.1 150 52.0
Sed0002831 Sechium edule HOM05D006535 ORTHO05D008548 1.3e-32 143.7 150 54.7
Medtr2g024310 Medicago truncatula HOM05D006535 ORTHO05D008548 2.2e-32 142.9 151 52.3
Ca_00689_v3 Cicer arietinum L. HOM05D006535 ORTHO05D008548 2.9e-32 142.5 133 57.1
Rhsim02G0105100 Rhododendron simsii HOM05D006535 ORTHO05D008548 3.7e-32 142.1 144 55.6
Hma1.2p1_1358F.1_g277940 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 1.1e-31 140.6 138 58.0
Lj6g0003188 Lotus japonicus HOM05D006535 ORTHO05D008548 1.9e-31 139.8 133 56.4
Glyma.09G007100 Glycine max HOM05D006535 ORTHO05D008548 3.2e-31 139.0 133 54.1
Lalb_Chr18g0056581 Lupinus albus HOM05D006535 ORTHO05D008548 5.4e-31 138.3 166 50.0
PSO541G2423 Papaver somniferum HOM05D006535 ORTHO05D008548 7.0e-31 137.9 135 54.1
AUR62012752 Chenopodium quinoa HOM05D006535 ORTHO05D008548 9.2e-31 137.5 135 55.6
AUR62021906 Chenopodium quinoa HOM05D006535 ORTHO05D008548 1.2e-30 137.1 135 54.8
Glyma.15G111500 Glycine max HOM05D006535 ORTHO05D008548 1.2e-30 137.1 133 53.4
Psat1g177760 Pisum sativum HOM05D006535 ORTHO05D008548 1.2e-30 137.1 151 50.3
vmacro15802 Vaccinium macrocarpon HOM05D006535 ORTHO05D008548 1.6e-30 136.7 133 57.1
VMungo0540G1326 Vigna mungo HOM05D006535 ORTHO05D008548 3.5e-30 135.6 167 47.3
Hund23439 Selenicereus undatus HOM05D006535 ORTHO05D008548 4.6e-30 135.2 135 54.8
Dinv13934 Davidia involucrata HOM05D006535 ORTHO05D008548 7.8e-30 134.4 133 60.2
Phvul.006G146200 Phaseolus vulgaris HOM05D006535 ORTHO05D008548 1.3e-29 133.7 167 46.7
EL10Ac8g20123 Beta vulgaris HOM05D006535 ORTHO05D008548 6.6e-29 131.3 135 52.6
Sc05g0009420 Simmondsia chinensis HOM05D006535 ORTHO05D008548 8.6e-29 131.0 135 53.3
Actinidia11871 Actinidia chinensis HOM05D006535 ORTHO05D008548 1.1e-28 130.6 133 55.6
Migut.H01587 Erythranthe guttata HOM05D006535 ORTHO05D008548 1.9e-28 129.8 133 54.9
HanXRQChr01g0006511 Helianthus annuus HOM05D006535 ORTHO05D008548 4.3e-28 128.6 166 45.8
THA.LOC104812977 Tarenaya hassleriana HOM05D006535 ORTHO05D008548 1.2e-27 127.1 133 53.4
MSTRG.14630 Avicennia marina HOM05D006535 ORTHO05D008548 1.6e-27 126.7 165 46.1
arahy.Tifrunner.gnm1.ann1.P3I999 Arachis hypogaea HOM05D006535 ORTHO05D008548 2.1e-27 126.3 128 52.3
BcaC01g04564 Brassica carinata HOM05D006535 ORTHO05D008548 2.1e-27 126.3 133 50.4
Cc09_g01280 Coffea canephora HOM05D006535 ORTHO05D008548 2.1e-27 126.3 133 53.4
Thhalv10028619m.g Eutrema salsugineum HOM05D006535 ORTHO05D008548 2.1e-27 126.3 133 51.1
ECA248G3623 Erigeron canadensis HOM05D006535 ORTHO05D008548 6.2e-27 124.8 166 45.2
Ah.09g234560 Amaranthus hybridus HOM05D006535 ORTHO05D008548 8.1e-27 124.4 135 51.1
A03p29930 Brassica napus HOM05D006535 ORTHO05D008548 8.1e-27 124.4 133 50.4
AT4G04320 Arabidopsis thaliana HOM05D006535 ORTHO05D008548 2.3e-26 122.9 133 51.9
DCAR_024986 Daucus carota HOM05D006535 ORTHO05D008548 3.1e-26 122.5 133 49.6
AL6G47860 Arabidopsis lyrata HOM05D006535 ORTHO05D008548 4.0e-26 122.1 133 51.1
arahy.Tifrunner.gnm1.ann1.H9DKU3 Arachis hypogaea HOM05D006535 ORTHO05D008548 8.9e-26 120.9 154 46.1
SEGI_21824 Sequoiadendron giganteum HOM05D006535 ORTHO05D008548 1.2e-25 120.6 152 43.4
Carub.0006s3215 Capsella rubella HOM05D006535 ORTHO05D008548 7.5e-25 117.9 133 49.6
ATR0686G032 Amborella trichopoda HOM05D006535 ORTHO05D008548 9.9e-25 117.5 135 50.4
CARHR253140 Cardamine hirsuta HOM05D006535 ORTHO05D008548 9.9e-25 117.5 133 49.6
SGA_v2.0_scaffold89G27482 Striga asiatica HOM05D006535 ORTHO05D008548 2.9e-24 115.9 133 51.9
HPP92_010356 Vanilla planifolia HOM05D006535 ORTHO05D008548 8.3e-24 114.4 132 49.2
Lsat_1_v5_gn_1_129581 Lactuca sativa HOM05D006535 ORTHO05D008548 1.4e-23 113.6 133 49.6
CAN.G23.21 Capsicum annuum HOM05D006535 ORTHO05D008548 2.4e-23 112.8 133 48.9
Os09g0394100 Oryza sativa ssp. japonica HOM05D006535 ORTHO05D008548 2.4e-23 112.8 133 48.1
Sp6g04530 Schrenkiella parvula HOM05D006535 ORTHO05D008548 4.1e-23 112.1 133 49.6
PGSC0003DMG402021462 Solanum tuberosum HOM05D006535 ORTHO05D008548 5.4e-23 111.7 133 47.4
Nitab4.5_0002668g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 7.1e-23 111.3 133 48.1
unitig_61.g26097 Utricularia gibba HOM05D006535 ORTHO05D008548 9.2e-23 110.9 150 42.0
Oeu049693.4 Olea europaea HOM05D006535 ORTHO05D008548 2.1e-22 109.8 158 44.9
Aa31LG9G9880 Aethionema arabicum HOM05D006535 ORTHO05D008548 1.0e-21 107.5 100 58.0
Peaxi162Scf00294g01013 Petunia axillaris HOM05D006535 ORTHO05D008548 1.0e-21 107.5 133 45.1
CDE06G1909 Ceratophyllum demersum HOM05D006535 ORTHO05D008548 5.6e-20 101.7 133 42.9
Zm00001eb099100 Zea mays HOM05D006535 ORTHO05D008548 1.2e-19 100.5 134 47.0
Mapoly0112s0027 Marchantia polymorpha HOM05D006535 ORTHO05D008548 3.6e-19 99.0 149 38.3
BcaB01g02601 Brassica carinata HOM05D006535 ORTHO05D008548 4.7e-19 98.6 133 42.9
BraA03t12182Z Brassica rapa HOM05D006535 ORTHO05D008548 3.4e-17 92.4 133 40.6
C03p36220 Brassica napus HOM05D006535 ORTHO05D008548 4.4e-17 92.0 133 40.6
Lj1C1235T17 Lonicera japonica HOM05D006535 ORTHO05D008548 5.8e-17 91.7 224 32.6
AagrBONN_evm.TU.Sc2ySwM_117.3852 Anthoceros agrestis HOM05D006535 ORTHO05D008548 7.6e-17 91.3 133 39.8
BolC3t15931H Brassica oleracea HOM05D006535 ORTHO05D008548 9.9e-17 90.9 133 39.8
Pp3c1_9420 Physcomitrium patens HOM05D006535 ORTHO05D008548 8.4e-16 87.8 118 43.2
Hma1.2p1_1358F.1_g277950 Hydrangea macrophylla HOM05D006535 ORTHO05D008548 1.5e-12 77.0 65 66.2
SMO367G0626 Selaginella moellendorffii HOM05D000208 ORTHO05D008548 1.1e-10 70.9 143 33.6
Atru.chr10.2274 Acer truncatum HOM05D006535 ORTHO05D008548 1.4e-10 70.5 67 55.2
Nitab4.5_0000005g0020 Nicotiana tabacum HOM05D006535 ORTHO05D008548 1.8e-10 70.1 65 58.5
Eucgr.E03995 Eucalyptus grandis HOM05D006535 ORTHO05D000824 3.4e-09 65.9 77 45.5
Manes.17G027900 Manihot esculenta HOM05D006535 ORTHO05D008548 4.2e-07 58.9 98 39.8


User provided reference genes

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