Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0486741 Rosa chinensis HOM05D007601 ORTHO05D009605 7.5e-65 250.4 127 100.0
FAN26G1400 Fragaria x ananassa HOM05D007601 ORTHO05D009605 5.6e-52 207.6 115 90.4
FvH4_1g26600 Fragaria vesca HOM05D007601 ORTHO05D009605 1.4e-50 203.0 111 91.9
Prupe.3G005400 Prunus persica HOM05D007601 ORTHO05D009605 1.3e-48 196.4 115 86.1
TWI59G0276 Tripterygium wilfordii HOM05D007601 ORTHO05D009605 4.2e-47 191.4 120 80.8
FAN19G1881 Fragaria x ananassa HOM05D007601 ORTHO05D009605 3.5e-46 188.3 138 73.9
MD17G1280000 Malus domestica HOM05D007601 ORTHO05D009605 3.5e-46 188.3 118 83.1
MD09G1287800 Malus domestica HOM05D007601 ORTHO05D009605 7.8e-46 187.2 109 86.2
FAN28G1650 Fragaria x ananassa HOM05D007601 ORTHO05D009605 1.0e-45 186.8 99 92.9
Gohir.A11G107400 Gossypium hirsutum HOM05D007601 ORTHO05D009605 2.3e-45 185.7 114 78.1
COL.COLO4_23178 Corchorus olitorius HOM05D007601 ORTHO05D009605 8.7e-45 183.7 115 78.3
Manes.01G231900 Manihot esculenta HOM05D007601 ORTHO05D009605 8.7e-45 183.7 112 78.6
QL12p018497 Quercus lobata HOM05D007601 ORTHO05D009605 1.1e-44 183.3 111 79.3
Dinv33148 Davidia involucrata HOM05D007601 ORTHO05D009605 1.5e-44 183.0 120 78.3
Thecc.01G320300 Theobroma cacao HOM05D007601 ORTHO05D009605 4.3e-44 181.4 115 78.3
Potri.002G191200 Populus trichocarpa HOM05D007601 ORTHO05D009605 5.6e-44 181.0 124 74.2
Duzib138G1106 Durio zibethinus HOM05D007601 ORTHO05D009605 7.3e-44 180.6 114 76.3
Sabra02G0164400 Salix brachista HOM05D007601 ORTHO05D009605 7.3e-44 180.6 111 79.3
arahy.Tifrunner.gnm1.ann1.FU6CGW Arachis hypogaea HOM05D007601 ORTHO05D009605 9.6e-44 180.3 109 78.9
Hma1.2p1_0965F.1_g242190 Hydrangea macrophylla HOM05D007601 ORTHO05D009605 2.1e-43 179.1 116 76.7
arahy.Tifrunner.gnm1.ann1.UJ54IQ Arachis hypogaea HOM05D007601 ORTHO05D009605 3.6e-43 178.3 109 78.0
CiPaw.07G121600 Carya illinoinensis HOM05D007601 ORTHO05D009605 3.6e-43 178.3 112 80.4
Gohir.D11G112200 Gossypium hirsutum HOM05D007601 ORTHO05D009605 4.8e-43 177.9 114 76.3
Lalb_Chr04g0260071 Lupinus albus HOM05D007601 ORTHO05D009605 1.1e-42 176.8 109 79.8
TAR633G2747 Trochodendron aralioides HOM05D007601 ORTHO05D009605 1.4e-42 176.4 114 76.3
Atru.chr5.923 Acer truncatum HOM05D007601 ORTHO05D009605 1.8e-42 176.0 113 74.3
CSS0043622 Camellia sinensis var. sinensis HOM05D007601 ORTHO05D009605 1.8e-42 176.0 110 78.2
Eucgr.H00897 Eucalyptus grandis HOM05D007601 ORTHO05D009605 2.4e-42 175.6 111 78.4
Lj1g0003568 Lotus japonicus HOM05D007601 ORTHO05D009605 3.1e-42 175.3 107 78.5
Medtr7g109980 Medicago truncatula HOM05D007601 ORTHO05D009605 3.1e-42 175.3 108 78.7
CSS0036648 Camellia sinensis var. sinensis HOM05D007601 ORTHO05D009605 4.0e-42 174.9 110 77.3
Ciclev10022849m.g Citrus clementina HOM05D007601 ORTHO05D009605 4.0e-42 174.9 118 75.4
Glyma.03G222200 Glycine max HOM05D007601 ORTHO05D009605 4.0e-42 174.9 108 77.8
VMungo1383G2396 Vigna mungo HOM05D007601 ORTHO05D009605 4.0e-42 174.9 104 79.8
Glyma.19G219400 Glycine max HOM05D007601 ORTHO05D009605 6.9e-42 174.1 108 78.7
TPR.G4122 Trifolium pratense HOM05D007601 ORTHO05D009605 9.0e-42 173.7 108 78.7
Ca_09231_v3 Cicer arietinum L. HOM05D007601 ORTHO05D009605 2.0e-41 172.6 108 77.8
Rhsim01G0292900 Rhododendron simsii HOM05D007601 ORTHO05D009605 2.0e-41 172.6 110 76.4
Phvul.001G215600 Phaseolus vulgaris HOM05D007601 ORTHO05D009605 2.6e-41 172.2 107 76.6
THA.LOC104815915 Tarenaya hassleriana HOM05D007601 ORTHO05D009605 3.4e-41 171.8 109 72.5
Gorai.007G120500 Gossypium raimondii HOM05D007601 ORTHO05D009605 4.5e-41 171.4 107 76.6
Psat3g018760 Pisum sativum HOM05D007601 ORTHO05D009605 4.5e-41 171.4 108 78.7
MSTRG.18076 Avicennia marina HOM05D007601 ORTHO05D009605 3.8e-40 168.3 119 72.3
Cpa.g.c29544.1 Carica papaya HOM05D007601 ORTHO05D009605 1.1e-39 166.8 117 71.8
Sed0008912 Sechium edule HOM05D007601 ORTHO05D009605 1.4e-39 166.4 109 71.6
DCAR_002918 Daucus carota HOM05D007601 ORTHO05D009605 1.9e-39 166.0 109 76.1
Migut.D00044 Erythranthe guttata HOM05D007601 ORTHO05D009605 1.9e-39 166.0 122 72.1
CANSAT25G0069 Cannabis sativa HOM05D007601 ORTHO05D009605 9.3e-39 163.7 107 76.6
GSVIVG01028182001 Vitis vinifera HOM05D007601 ORTHO05D009605 1.2e-38 163.3 111 69.4
Sopen06g036000 Solanum pennellii HOM05D007601 ORTHO05D009605 1.6e-38 162.9 113 72.6
BcaB01g02392 Brassica carinata HOM05D007601 ORTHO05D009605 2.1e-38 162.5 107 70.1
A03p31410 Brassica napus HOM05D007601 ORTHO05D009605 4.6e-38 161.4 109 68.8
Sc14g0006440 Simmondsia chinensis HOM05D007601 ORTHO05D009605 4.6e-38 161.4 115 70.4
BraA03t12322Z Brassica rapa HOM05D007601 ORTHO05D009605 6.0e-38 161.0 109 68.8
HanXRQChr01g0010181 Helianthus annuus HOM05D007601 ORTHO05D009605 6.0e-38 161.0 112 67.9
Oeu044742.1 Olea europaea HOM05D007601 ORTHO05D009605 7.9e-38 160.6 111 71.2
Aa31LG5G1450 Aethionema arabicum HOM05D007601 ORTHO05D009605 1.0e-37 160.2 107 68.2
Carub.0006s3532 Capsella rubella HOM05D007601 ORTHO05D009605 1.8e-37 159.5 119 63.9
Sp6g01760 Schrenkiella parvula HOM05D007601 ORTHO05D009605 1.8e-37 159.5 112 64.3
BcaC01g06793 Brassica carinata HOM05D007601 ORTHO05D009605 3.0e-37 158.7 109 67.9
BcaC01g06795 Brassica carinata HOM05D007601 ORTHO05D009605 3.0e-37 158.7 109 67.9
C03p38320 Brassica napus HOM05D007601 ORTHO05D009605 3.0e-37 158.7 109 67.9
BolC3t16113H Brassica oleracea HOM05D007601 ORTHO05D009605 3.0e-37 158.7 109 67.9
CsaV3_3G031680 Cucumis sativus L. HOM05D007601 ORTHO05D009605 5.1e-37 157.9 109 68.8
MELO3C012921.2 Cucumis melo HOM05D007601 ORTHO05D009605 1.9e-36 156.0 102 72.5
Thhalv10029076m.g Eutrema salsugineum HOM05D007601 ORTHO05D009605 2.5e-36 155.6 107 67.3
AL6G51380 Arabidopsis lyrata HOM05D007601 ORTHO05D009605 4.3e-36 154.8 109 64.2
PSO210G6513 Papaver somniferum HOM05D007601 ORTHO05D009605 4.3e-36 154.8 111 70.3
CARHR249870 Cardamine hirsuta HOM05D007601 ORTHO05D009605 5.6e-36 154.5 116 61.2
PSO761G0263 Papaver somniferum HOM05D007601 ORTHO05D009605 9.6e-36 153.7 108 71.3
ClCG10G011680 Citrullus lanatus HOM05D007601 ORTHO05D009605 1.6e-35 152.9 130 61.5
ECA248G1243 Erigeron canadensis HOM05D007601 ORTHO05D009605 1.6e-35 152.9 108 67.6
Hund09590 Selenicereus undatus HOM05D007601 ORTHO05D009605 2.4e-34 149.1 115 63.5
AT4G01897 Arabidopsis thaliana HOM05D007601 ORTHO05D009605 1.2e-33 146.7 116 58.6
Aqoxy2G02617 Aquilegia oxysepala HOM05D007601 ORTHO05D009605 1.5e-33 146.4 108 68.5
EL10As5g23595 Beta vulgaris HOM05D007601 ORTHO05D009605 1.5e-33 146.4 117 61.5
Cc01_g21960 Coffea canephora HOM05D007601 ORTHO05D009605 3.4e-33 145.2 111 68.5
AUR62011748 Chenopodium quinoa HOM05D007601 ORTHO05D009605 1.4e-31 139.8 109 59.6
Zm00001eb043090 Zea mays HOM05D007601 ORTHO05D009605 7.1e-31 137.5 109 60.6
CAN.G1209.15 Capsicum annuum HOM05D007601 ORTHO05D009605 9.3e-31 137.1 109 65.1
Os03g0564200 Oryza sativa ssp. japonica HOM05D007601 ORTHO05D009605 9.6e-28 127.1 106 61.3
FAN23G1483 Fragaria x ananassa HOM05D007601 ORTHO05D009605 3.7e-27 125.2 71 87.3
Nn4g25447 Nelumbo nucifera HOM05D007601 ORTHO05D009605 6.2e-27 124.4 111 59.5
SalBow6G1877 Salvia bowleyana HOM05D007601 ORTHO05D009605 6.5e-24 114.4 68 82.4
Pp3c1_30400 Physcomitrium patens HOM05D007601 ORTHO05D009605 1.6e-22 109.8 108 51.9
Solyc06g084625.1 Solanum lycopersicum HOM05D007601 ORTHO05D009605 1.0e-21 107.1 69 78.3
AUR62024591 Chenopodium quinoa HOM05D007601 ORTHO05D009605 3.0e-21 105.5 111 48.6
MBI19_g32697_MAGBIO Magnolia biondii HOM05D007601 ORTHO05D009605 3.0e-21 105.5 84 63.1
AagrBONN_evm.TU.Sc2ySwM_228.1634 Anthoceros agrestis HOM05D007601 ORTHO05D009605 9.7e-20 100.5 108 48.1
vmacro15096 Vaccinium macrocarpon HOM05D007601 ORTHO05D009605 1.3e-19 100.1 62 79.0
CDE05G3673 Ceratophyllum demersum HOM05D007601 ORTHO05D009605 1.6e-19 99.8 83 63.9
Mapoly0105s0007 Marchantia polymorpha HOM05D007601 ORTHO05D009605 2.0e-17 92.8 106 49.1
Thhalv10009552m.g Eutrema salsugineum HOM05D007601 ORTHO05D009605 3.0e-13 79.0 85 50.6
SMO196G0166 Selaginella moellendorffii HOM05D007601 ORTHO05D009605 1.1e-12 77.0 104 44.2
CBR_g40435 Chara braunii HOM05D007601 ORTHO05D009605 7.7e-09 64.3 98 41.8
Solyc04g150173.1 Solanum lycopersicum HOM05D007601 ORTHO05D009605 3.8e-08 62.0 45 64.4


User provided reference genes

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