Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 5.8e-104 380.9 198 100.0
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 1.9e-91 339.3 198 88.4
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 4.7e-90 334.7 198 87.9
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 1.0e-84 317.0 230 75.7
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 1.9e-83 312.8 230 75.2
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 4.8e-82 308.1 196 81.1
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.7e-76 289.7 193 78.2
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 2.5e-75 285.8 196 77.0
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 2.4e-73 279.3 199 72.4
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 3.1e-73 278.9 199 72.4
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 6.9e-73 277.7 198 73.2
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 9.0e-73 277.3 196 74.5
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 1.9e-70 269.6 200 71.0
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 4.2e-70 268.5 196 70.4
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 7.1e-70 267.7 197 72.1
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 9.3e-70 267.3 187 72.7
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 6.0e-69 264.6 194 73.2
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 1.3e-68 263.5 193 69.9
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 1.3e-68 263.5 187 71.7
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 1.3e-68 263.5 191 72.3
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 3.0e-68 262.3 196 68.9
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 1.5e-67 260.0 194 69.6
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 2.5e-67 259.2 195 72.3
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.5e-67 259.2 195 67.7
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 3.3e-67 258.8 191 68.6
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 1.3e-66 256.9 191 68.6
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 6.2e-66 254.6 203 68.5
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 2.4e-65 252.7 197 68.0
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 9.0e-65 250.8 201 65.7
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 1.3e-63 246.9 183 71.6
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 1.7e-63 246.5 193 67.9
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 1.7e-63 246.5 175 72.0
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 1.4e-62 243.4 174 71.3
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 3.2e-62 242.3 191 71.2
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 4.2e-62 241.9 185 68.1
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 7.1e-62 241.1 193 65.3
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 9.3e-62 240.7 201 64.7
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 1.6e-61 240.0 156 75.6
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 2.7e-61 239.2 163 71.8
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 7.9e-61 237.7 233 62.7
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 1.8e-60 236.5 161 71.4
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 1.8e-60 236.5 225 59.1
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 2.3e-60 236.1 192 64.6
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 2.3e-60 236.1 168 73.2
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 1.5e-59 233.4 197 66.0
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 1.5e-59 233.4 196 63.3
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 1.5e-59 233.4 209 61.7
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 1.9e-59 233.0 157 73.2
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 3.3e-59 232.3 157 73.9
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 7.4e-59 231.1 194 64.9
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 7.4e-59 231.1 194 62.4
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 7.4e-59 231.1 157 73.2
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 9.6e-59 230.7 166 70.5
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 9.6e-59 230.7 195 61.5
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 1.3e-58 230.3 188 65.4
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 1.3e-58 230.3 197 63.5
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 1.3e-58 230.3 188 65.4
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.3e-58 230.3 196 64.8
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 3.7e-58 228.8 196 64.3
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 8.2e-58 227.6 159 70.4
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 1.4e-57 226.9 164 70.1
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 1.8e-57 226.5 156 73.1
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 2.4e-57 226.1 194 62.9
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 2.4e-57 226.1 137 82.5
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 3.1e-57 225.7 194 62.9
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 3.1e-57 225.7 187 63.6
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 5.3e-57 224.9 193 64.2
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 1.2e-56 223.8 194 62.4
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 1.2e-56 223.8 189 64.0
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 2.0e-56 223.0 184 62.5
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 2.6e-56 222.6 143 76.9
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 3.4e-56 222.2 150 75.3
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 4.5e-56 221.9 186 62.9
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 5.9e-56 221.5 188 64.4
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.3e-55 220.3 165 69.1
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 1.7e-55 219.9 176 66.5
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 2.9e-55 219.2 138 78.3
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 2.9e-55 219.2 138 78.3
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 1.2e-53 213.8 184 62.0
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 1.2e-53 213.8 171 67.8
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 2.7e-53 212.6 180 63.9
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 4.6e-53 211.8 141 76.6
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 1.8e-52 209.9 198 61.1
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 1.8e-52 209.9 130 79.2
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 7.4e-51 204.5 195 56.9
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 1.1e-49 200.7 131 76.3
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 7.2e-46 188.0 127 71.7
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 4.6e-45 185.3 127 68.5
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 2.0e-43 179.9 105 86.7
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 5.7e-43 178.3 194 55.7
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 3.7e-42 175.6 238 47.5
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 3.4e-40 169.1 169 56.2
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 8.5e-39 164.5 122 67.2
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 8.5e-39 164.5 96 84.4
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 1.9e-38 163.3 102 83.3
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 3.2e-38 162.5 106 80.2
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 5.5e-38 161.8 198 48.0
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 6.7e-36 154.8 139 58.3
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 6.3e-34 148.3 193 46.1
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 6.3e-34 148.3 103 69.9
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.4e-33 147.1 103 68.9
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 4.5e-32 142.1 150 49.3
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 8.5e-31 137.9 109 64.2
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.1e-30 137.5 149 53.0
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 8.0e-29 131.3 86 77.9
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 8.8e-28 127.9 123 55.3
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.1e-25 120.9 135 48.1
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.2e-23 113.2 71 81.7
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.2e-23 113.2 71 81.7
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.9e-22 110.2 94 63.8
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.2e-21 107.5 79 65.8
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 4.0e-20 102.4 63 84.1
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 1.3e-18 97.4 140 43.6
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 3.8e-15 85.9 109 37.6
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 2.2e-10 70.1 39 79.5
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 2.2e-10 70.1 39 79.5


User provided reference genes

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