Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0486661 Rosa chinensis HOM05D008191 ORTHO05D010044 6.2e-97 357.5 180 100.0
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 2.0e-39 166.4 181 49.7
Potri.002G191500 Populus trichocarpa HOM05D008191 ORTHO05D010044 2.5e-37 159.5 156 51.3
Sabra02G0164100 Salix brachista HOM05D008191 ORTHO05D010044 2.3e-35 152.9 187 46.5
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 1.2e-31 140.6 174 42.5
Thecc.01G319900 Theobroma cacao HOM05D008191 ORTHO05D010044 6.5e-30 134.8 179 41.3
QL01p035229 Quercus lobata HOM05D012615 ORTHO05D010044 6.1e-28 128.3 170 43.5
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 4.0e-27 125.6 172 44.8
COL.COLO4_23185 Corchorus olitorius HOM05D008191 ORTHO05D010044 6.8e-27 124.8 172 39.0
Gorai.001G145900 Gossypium raimondii HOM05D008191 ORTHO05D010044 3.7e-25 119.0 167 35.9
Cpa.g.c31737 Carica papaya HOM05D008191 ORTHO05D010044 1.8e-24 116.7 175 35.4
Gohir.D07G134300 Gossypium hirsutum HOM05D008191 ORTHO05D010044 3.1e-24 115.9 167 35.3
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 4.5e-23 112.1 166 41.6
Atru.chr5.927 Acer truncatum HOM05D008191 ORTHO05D010044 5.9e-23 111.7 157 40.1
Gohir.A07G130033 Gossypium hirsutum HOM05D008191 ORTHO05D010044 1.3e-22 110.5 148 35.8
Atru.chr5.928 Acer truncatum HOM05D008191 ORTHO05D010044 2.3e-22 109.8 160 37.5
PSO724G1245 Papaver somniferum HOM05D008191 ORTHO05D010044 2.9e-22 109.4 169 37.3
QL02p008132 Quercus lobata HOM05D012615 ORTHO05D010044 3.3e-21 105.9 150 38.0
PSO620G0001 Papaver somniferum HOM05D008191 ORTHO05D010044 2.8e-20 102.8 167 34.1
Ciclev10024443m.g Citrus clementina HOM05D008191 ORTHO05D010044 8.9e-19 97.8 179 31.8
THA.LOC104827389 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 2.6e-18 96.3 175 36.0
QL09p000952 Quercus lobata HOM05D012615 ORTHO05D010044 9.8e-18 94.4 166 34.3
TAR633G1553 Trochodendron aralioides HOM05D012615 ORTHO05D010044 1.3e-17 94.0 172 34.3
PSO729G0168 Papaver somniferum HOM05D008191 ORTHO05D010044 8.3e-17 91.3 168 30.4
PSO724G0909 Papaver somniferum HOM05D008191 ORTHO05D010044 2.4e-16 89.7 152 33.6
Carub.0004s1276 Capsella rubella HOM05D008191 ORTHO05D010044 3.2e-16 89.4 147 34.0
THA.LOC104826194 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 2.0e-15 86.7 165 33.9
AT2G31430 Arabidopsis thaliana HOM05D008191 ORTHO05D010044 3.5e-15 85.9 169 33.1
AL4G26690 Arabidopsis lyrata HOM05D008191 ORTHO05D010044 1.7e-14 83.6 167 31.7
MBI19_g08236_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D010044 1.7e-14 83.6 174 31.6
MBI19_g19941_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 2.5e-13 79.7 170 29.4
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 9.5e-13 77.8 170 28.8
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 2.8e-12 76.3 165 29.7
MBI19_g26316_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 8.0e-12 74.7 164 28.0
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 1.1e-11 74.3 148 27.0
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.1e-11 74.3 171 28.7
Cpa.g.sc27.190 Carica papaya HOM05D008403 ORTHO05D010317 1.2e-10 70.9 166 27.7
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 1.2e-10 70.9 178 29.2
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.0e-10 70.1 175 25.7
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 2.6e-10 69.7 182 28.0
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 3.4e-10 69.3 178 25.3
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 7.5e-10 68.2 164 28.7
RcHm_v2.0_Chr1g0344031 Rosa chinensis HOM05D001445 ORTHO05D001261 7.5e-10 68.2 175 28.6
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 9.8e-10 67.8 180 27.8
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 9.8e-10 67.8 152 29.6
QL03p069756 Quercus lobata HOM05D012615 ORTHO05D005932 1.7e-09 67.0 125 34.4
Aa31LG5G5510 Aethionema arabicum HOM05D008191 ORTHO05D010044 2.2e-09 66.6 149 28.9
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.2e-09 66.6 153 27.5
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 2.2e-09 66.6 167 28.7
MBI04_g03340_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D001261 1.1e-08 64.3 135 30.4
QL05p066293 Quercus lobata HOM05D008403 ORTHO05D010317 1.1e-08 64.3 142 28.9
TWI59G0004 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 1.1e-08 64.3 174 27.6
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 1.4e-08 63.9 151 27.2
Migut.O00479 Erythranthe guttata HOM05D022792 ORTHO05D001819 1.9e-08 63.5 172 30.2
TAR626G0884 Trochodendron aralioides HOM05D004113 ORTHO05D001207 1.9e-08 63.5 192 28.1
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 2.4e-08 63.2 170 26.5
EL10Ac1g00256 Beta vulgaris HOM05D001445 ORTHO05D001261 3.2e-08 62.8 130 29.2
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 3.2e-08 62.8 176 26.7
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 4.1e-08 62.4 118 27.1
TAR626G0056 Trochodendron aralioides HOM05D004113 ORTHO05D001207 4.1e-08 62.4 192 27.1
MBI18_g25092_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D005233 7.0e-08 61.6 168 25.0
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 7.0e-08 61.6 176 27.8
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 1.2e-07 60.8 176 29.5
Aa31LG5G5470 Aethionema arabicum HOM05D008191 ORTHO05D010044 1.6e-07 60.5 160 28.1
Migut.I00312 Erythranthe guttata HOM05D022792 ORTHO05D001819 1.6e-07 60.5 172 29.1
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 1.6e-07 60.5 155 27.1
MBI19_g05147_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.6e-07 60.5 165 26.7
PSO414G0002 Papaver somniferum HOM05D000563 ORTHO05D000536 1.6e-07 60.5 85 40.0
PSO714G0002 Papaver somniferum HOM05D000563 ORTHO05D000536 1.6e-07 60.5 85 40.0
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.6e-07 60.5 174 29.9
Thecc.04G309600 Theobroma cacao HOM05D008191 ORTHO05D010044 2.0e-07 60.1 178 24.2
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 2.0e-07 60.1 163 30.7
RcHm_v2.0_Chr1g0344001 Rosa chinensis HOM05D001445 ORTHO05D001261 2.7e-07 59.7 174 27.6
TWI14G0207 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 3.5e-07 59.3 159 26.4
Haze_02903 Corylus avellana HOM05D001445 ORTHO05D001261 4.6e-07 58.9 137 30.7
Glyma.06G152400 Glycine max HOM05D004113 ORTHO05D005233 4.6e-07 58.9 145 28.3
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 4.6e-07 58.9 181 24.9
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 4.6e-07 58.9 171 26.9
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 4.6e-07 58.9 143 30.1
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 4.6e-07 58.9 176 29.0
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 6.0e-07 58.5 159 26.4
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 6.0e-07 58.5 155 25.8
TAR073G0001 Trochodendron aralioides HOM05D001445 ORTHO05D001261 6.0e-07 58.5 176 28.4
Haze_05101 Corylus avellana HOM05D012615 ORTHO05D010044 7.8e-07 58.2 61 52.5
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 7.8e-07 58.2 171 28.7
PGSC0003DMG400040362 Solanum tuberosum HOM05D003146 ORTHO05D001819 7.8e-07 58.2 167 24.0
THA.LOC104801314 Tarenaya hassleriana HOM05D008191 ORTHO05D010044 7.8e-07 58.2 166 26.5
MBI19_g26312_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.0e-06 57.8 174 26.4
Psat0s10365g0080 Pisum sativum HOM05D004113 ORTHO05D005233 1.0e-06 57.8 168 25.6
Psat5g060000 Pisum sativum HOM05D004113 ORTHO05D005233 1.0e-06 57.8 168 25.6
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.0e-06 57.8 180 28.3
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 1.3e-06 57.4 175 25.1
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 1.3e-06 57.4 170 24.7
RcHm_v2.0_Chr5g0000141 Rosa chinensis HOM05D008403 ORTHO05D010317 1.3e-06 57.4 150 28.7
Thecc.05G326500 Theobroma cacao HOM05D011459 ORTHO05D013640 1.3e-06 57.4 172 27.9
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.3e-06 57.4 159 27.0
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 1.7e-06 57.0 171 24.6
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 1.7e-06 57.0 171 28.1
Eucgr.L02838 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.7e-06 57.0 143 28.0
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 1.7e-06 57.0 143 29.4
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.7e-06 57.0 169 26.0
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 1.7e-06 57.0 149 24.8
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.3e-06 56.6 168 23.8
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 2.3e-06 56.6 174 24.7
CANSAT56G1763 Cannabis sativa HOM05D001445 ORTHO05D001261 2.3e-06 56.6 155 23.9
Duzib147G1472 Durio zibethinus HOM05D004113 ORTHO05D005233 2.3e-06 56.6 168 22.6
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.3e-06 56.6 175 28.6
EL10Ac1g01806 Beta vulgaris HOM05D004113 ORTHO05D005233 3.0e-06 56.2 147 27.2
Cc07_g18140 Coffea canephora HOM05D004113 ORTHO05D005233 3.0e-06 56.2 174 23.6
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 3.0e-06 56.2 163 23.9
FvH4_3g00110 Fragaria vesca HOM05D008403 ORTHO05D010317 3.0e-06 56.2 151 27.8
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 3.0e-06 56.2 150 28.7
Hma1.2p1_0528F.1_g173060 Hydrangea macrophylla HOM05D004113 ORTHO05D005233 3.0e-06 56.2 178 27.0
Nitab4.5_0004809g0010 Nicotiana tabacum HOM05D001578 ORTHO05D001207 3.0e-06 56.2 169 20.1
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 3.0e-06 56.2 184 25.5
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 3.9e-06 55.8 176 25.0
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 3.9e-06 55.8 169 23.7
DCAR_028534 Daucus carota HOM05D004113 ORTHO05D005233 3.9e-06 55.8 177 26.0
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 3.9e-06 55.8 150 28.0
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 3.9e-06 55.8 135 25.2
PSO832G2548 Papaver somniferum HOM05D004113 ORTHO05D001207 3.9e-06 55.8 184 25.5
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 3.9e-06 55.8 145 26.9
QL02p008383 Quercus lobata HOM05D012615 ORTHO05D010044 3.9e-06 55.8 86 32.6
Rhsim03G0038400 Rhododendron simsii HOM05D001578 ORTHO05D001207 3.9e-06 55.8 176 29.0
MELO3C008049.2 Cucumis melo HOM05D004113 ORTHO05D005233 5.0e-06 55.5 187 23.5
Eucgr.L02459 Eucalyptus grandis HOM05D001445 ORTHO05D001261 5.0e-06 55.5 172 28.5
Oeu002900.1 Olea europaea HOM05D001445 ORTHO05D001261 5.0e-06 55.5 170 27.1
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 6.6e-06 55.1 172 23.8
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 6.6e-06 55.1 172 23.3
Eucgr.E00321 Eucalyptus grandis HOM05D001445 ORTHO05D001261 6.6e-06 55.1 176 26.7
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 6.6e-06 55.1 152 25.0
Prupe.5G048900 Prunus persica HOM05D001445 ORTHO05D001261 6.6e-06 55.1 174 25.3
vmacro00361 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 6.6e-06 55.1 178 24.7
Actinidia21379 Actinidia chinensis HOM05D001578 ORTHO05D001207 8.6e-06 54.7 176 27.8
CANSAT56G2517 Cannabis sativa HOM05D001445 ORTHO05D003404 8.6e-06 54.7 182 22.0
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 8.6e-06 54.7 150 28.0
Gohir.A11G230200 Gossypium hirsutum HOM05D004113 ORTHO05D005233 8.6e-06 54.7 173 23.7
Oeu063129.1 Olea europaea HOM05D009438 ORTHO05D010870 8.6e-06 54.7 180 21.7
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 8.6e-06 54.7 150 26.7
Sabra14G0032000 Salix brachista HOM05D001445 ORTHO05D001261 8.6e-06 54.7 178 31.5
TAR629G2132 Trochodendron aralioides HOM05D001445 ORTHO05D001261 8.6e-06 54.7 141 27.7
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 8.6e-06 54.7 177 28.8


User provided reference genes

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