Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 8.9e-29 129.4 58 100.0
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 4.4e-28 127.1 56 100.0
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 1.7e-27 125.2 56 100.0
RcHm_v2.0_Chr7g0210011 Rosa chinensis HOM05D006061 ORTHO05D007450 6.4e-19 96.7 45 95.6
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 2.7e-17 91.3 55 72.7
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 5.6e-15 83.6 44 79.5
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 9.5e-15 82.8 56 62.5
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 2.0e-12 75.1 55 60.0
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 2.6e-12 74.7 56 55.4
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 3.4e-12 74.3 56 57.1
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 2.2e-11 71.6 56 55.4
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 2.9e-11 71.2 56 53.6
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.1e-10 69.3 56 53.6
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 1.4e-10 68.9 66 48.5
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.4e-10 68.9 45 71.1
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 4.1e-10 67.4 56 55.4
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.6e-09 65.5 56 51.8
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 2.7e-09 64.7 56 55.4
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 3.5e-09 64.3 56 50.0
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 4.6e-09 63.9 56 50.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 4.6e-09 63.9 55 45.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 4.6e-09 63.9 55 54.5
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.6e-09 63.9 56 48.2
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 6.0e-09 63.5 55 49.1
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 1.3e-08 62.4 56 53.6
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 1.3e-08 62.4 56 51.8
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.3e-08 62.4 56 50.0
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.7e-08 62.0 56 51.8
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 2.3e-08 61.6 56 50.0
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 2.3e-08 61.6 56 48.2
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 3.9e-08 60.8 56 50.0
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 6.6e-08 60.1 56 48.2
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 8.6e-08 59.7 55 50.9
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 1.1e-07 59.3 55 50.9
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 1.1e-07 59.3 56 50.0
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.5e-07 58.9 49 53.1
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.5e-07 58.9 56 46.4
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 1.5e-07 58.9 56 46.4
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.9e-07 58.5 56 46.4
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.5e-07 58.2 56 44.6
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 2.5e-07 58.2 56 44.6
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 4.3e-07 57.4 56 53.6
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 4.3e-07 57.4 56 48.2
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 4.3e-07 57.4 56 50.0
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 5.6e-07 57.0 56 48.2
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 7.3e-07 56.6 56 46.4
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 2.1e-06 55.1 56 48.2
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.6e-06 54.3 56 44.6
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.6e-06 54.3 56 44.6
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.7e-06 53.9 56 42.9
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 8.1e-06 53.1 54 44.4
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 8.1e-06 53.1 56 46.4


User provided reference genes

Program Settings