Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0485151 Rosa chinensis HOM05D000665 ORTHO05D000140 4.8e-53 211.1 120 100.0
RcHm_v2.0_Chr1g0330381 Rosa chinensis HOM05D000665 ORTHO05D000140 5.9e-43 177.6 95 90.5
FvH4_2g13781 Fragaria vesca HOM05D000665 ORTHO05D000140 1.8e-36 156.0 95 80.0
FvH4_1g20120 Fragaria vesca HOM05D000665 ORTHO05D000140 2.4e-36 155.6 95 77.9
FAN19G1575 Fragaria x ananassa HOM05D000665 ORTHO05D000140 4.1e-36 154.8 95 77.9
FAN24G0085 Fragaria x ananassa HOM05D000665 ORTHO05D000140 2.0e-35 152.5 95 77.9
FAN26G1049 Fragaria x ananassa HOM05D000665 ORTHO05D000140 5.9e-35 151.0 95 78.9
FAN24G3328 Fragaria x ananassa HOM05D000665 ORTHO05D000140 6.1e-32 141.0 92 76.1
FAN27G0927 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.0e-31 140.2 94 75.5
FAN27G2455 Fragaria x ananassa HOM05D001671 ORTHO05D000140 3.3e-30 135.2 95 72.6
FvH4_4g15662 Fragaria vesca HOM05D000665 ORTHO05D000140 1.2e-27 126.7 95 69.5
Prupe.1G245200 Prunus persica HOM05D000665 ORTHO05D000140 4.2e-25 118.2 95 60.0
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 7.2e-25 117.5 95 60.0
Prupe.1G287900 Prunus persica HOM05D000665 ORTHO05D000140 2.7e-24 115.5 95 56.8
Prupe.7G027800 Prunus persica HOM05D000665 ORTHO05D000140 4.0e-23 111.7 95 56.8
Lj5g0014380 Lotus japonicus HOM05D000665 ORTHO05D000140 5.5e-17 91.3 79 55.7
Prupe.5G014200 Prunus persica HOM05D000665 ORTHO05D000140 5.5e-17 91.3 95 51.6
Lj1g0005320 Lotus japonicus HOM05D000665 ORTHO05D000140 7.2e-17 90.9 79 55.7
Lj6g0001109 Lotus japonicus HOM05D000665 ORTHO05D000140 7.2e-17 90.9 79 55.7
Lj1g0011582 Lotus japonicus HOM05D000665 ORTHO05D000140 9.4e-17 90.5 79 55.7
Prupe.4G256700 Prunus persica HOM05D000665 ORTHO05D000140 1.2e-16 90.1 63 66.7
Glyma.09G131700 Glycine max HOM05D000665 ORTHO05D000140 1.8e-15 86.3 68 55.9
Glyma.06G254400 Glycine max HOM05D000665 ORTHO05D000140 2.3e-15 85.9 68 55.9
Glyma.20G028300 Glycine max HOM05D000665 ORTHO05D000140 8.8e-15 84.0 82 51.2
COL.COLO4_07541 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.0e-14 82.8 87 49.4
COL.COLO4_35899 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.0e-14 82.8 87 49.4
Glyma.08G025200 Glycine max HOM05D000665 ORTHO05D000140 2.0e-14 82.8 95 42.1
Glyma.09G072900 Glycine max HOM05D000665 ORTHO05D000140 2.0e-14 82.8 95 42.1
Glyma.11G158600 Glycine max HOM05D000665 ORTHO05D000140 9.8e-14 80.5 95 40.0
Glyma.11G208100 Glycine max HOM05D000665 ORTHO05D000140 2.8e-13 79.0 95 40.0
FAN08G1891 Fragaria x ananassa HOM05D013617 ORTHO05D016313 4.8e-13 78.2 43 76.7
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 8.3e-13 77.4 56 60.7
Glyma.05G095200 Glycine max HOM05D000665 ORTHO05D000140 1.8e-12 76.3 80 45.0
Glyma.05G097200 Glycine max HOM05D000665 ORTHO05D000140 1.8e-12 76.3 64 53.1
Glyma.07G209700 Glycine max HOM05D000665 ORTHO05D000140 1.8e-12 76.3 100 41.0
COL.COLO4_11921 Corchorus olitorius HOM05D000665 ORTHO05D000140 3.1e-12 75.5 87 48.3
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 5.4e-12 74.7 64 51.6
Lj2g0007472 Lotus japonicus HOM05D000034 ORTHO05D000037 5.4e-12 74.7 65 53.8
Glyma.08G287150 Glycine max HOM05D000665 ORTHO05D000140 1.6e-11 73.2 72 47.2
Glyma.02G179401 Glycine max HOM05D000665 ORTHO05D000140 4.5e-11 71.6 72 44.4
Glyma.13G077400 Glycine max HOM05D000665 ORTHO05D000140 4.5e-11 71.6 64 51.6
Lj2g0005129 Lotus japonicus HOM05D000034 ORTHO05D000037 1.0e-10 70.5 50 62.0
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 1.3e-10 70.1 64 48.4
Lj2g0022922 Lotus japonicus HOM05D000665 ORTHO05D000140 2.9e-10 68.9 79 48.1
Medtr7g102860 Medicago truncatula HOM05D000665 ORTHO05D000140 2.9e-10 68.9 85 40.0
TAR629G1231 Trochodendron aralioides HOM05D000665 ORTHO05D000140 3.8e-10 68.6 58 51.7
Glyma.16G081300 Glycine max HOM05D000665 ORTHO05D000140 6.6e-10 67.8 64 48.4
Medtr0014s0040 Medicago truncatula HOM05D000665 ORTHO05D000140 8.6e-10 67.4 68 48.5
Psat1g190200 Pisum sativum HOM05D000665 ORTHO05D000140 5.5e-09 64.7 64 43.8
SGA_v2.0_scaffold152G36847 Striga asiatica HOM05D000665 ORTHO05D000140 7.2e-09 64.3 79 43.0
Glyma.03G069900 Glycine max HOM05D000665 ORTHO05D000140 9.5e-09 63.9 48 56.2
Migut.C00054 Erythranthe guttata HOM05D000665 ORTHO05D000140 2.1e-08 62.8 58 48.3
Glyma.17G193900 Glycine max HOM05D000665 ORTHO05D000140 3.6e-08 62.0 87 40.2
FAN08G1969 Fragaria x ananassa HOM05D000665 ORTHO05D000140 4.7e-08 61.6 56 60.7
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 1.0e-07 60.5 68 44.1
RcHm_v2.0_Chr5g0053961 Rosa chinensis HOM05D009145 ORTHO05D000140 1.8e-07 59.7 64 43.8
Medtr4g009630 Medicago truncatula HOM05D000563 ORTHO05D000536 4.0e-07 58.5 45 57.8
RcHm_v2.0_Chr4g0405761 Rosa chinensis HOM05D000665 ORTHO05D000140 1.2e-06 57.0 64 40.6
Lsat_1_v5_gn_2_16340 Lactuca sativa HOM05D000034 ORTHO05D000277 3.4e-06 55.5 63 44.4
SGA_v2.0_scaffold105G30384 Striga asiatica HOM05D000034 ORTHO05D000277 3.4e-06 55.5 78 34.6
SGA_v2.0_scaffold3G01632 Striga asiatica HOM05D009666 ORTHO05D000277 4.4e-06 55.1 78 34.6
Hma1.2p1_2091F.1_g313856 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 7.5e-06 54.3 73 37.0
FAN25G1869 Fragaria x ananassa HOM05D000665 ORTHO05D000140 9.8e-06 53.9 95 38.9


User provided reference genes

Program Settings