Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 1.0e-133 480.3 282 100.0
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 3.6e-107 392.1 277 80.9
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 8.8e-106 387.5 281 84.0
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 9.7e-105 384.0 281 83.3
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.4e-103 379.4 280 75.4
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 6.6e-69 265.0 291 51.2
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 7.3e-68 261.5 291 50.9
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 4.7e-67 258.8 281 50.9
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 1.0e-66 257.7 281 50.5
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 1.4e-66 257.3 283 50.9
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 1.8e-66 256.9 277 52.3
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 3.1e-66 256.1 275 50.5
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 4.0e-66 255.8 281 50.5
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 1.2e-65 254.2 286 50.3
Prupe.4G288100 Prunus persica HOM05D007044 ORTHO05D008981 2.0e-65 253.4 331 58.3
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 3.4e-65 252.7 292 53.8
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 3.4e-65 252.7 275 49.5
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 9.8e-65 251.1 291 49.5
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 9.8e-65 251.1 230 57.8
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 2.4e-63 246.5 277 49.8
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 4.1e-63 245.7 277 51.3
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 5.4e-63 245.4 224 55.8
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 5.4e-63 245.4 292 50.0
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 2.0e-62 243.4 237 54.9
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 2.7e-62 243.0 277 49.1
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 2.7e-62 243.0 297 52.9
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 3.5e-62 242.7 295 46.4
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 4.6e-62 242.3 280 48.6
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 2.3e-61 240.0 227 54.6
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 3.0e-61 239.6 283 48.1
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 3.9e-61 239.2 277 48.4
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 5.0e-61 238.8 280 46.8
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 5.0e-61 238.8 228 55.7
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 1.1e-60 237.7 286 47.2
FAN28G0850 Fragaria x ananassa HOM05D007044 ORTHO05D008981 1.1e-60 237.7 272 54.4
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 2.5e-60 236.5 223 54.7
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 3.3e-60 236.1 280 48.9
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 4.3e-60 235.7 283 48.1
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 5.6e-60 235.3 295 46.8
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 7.3e-60 235.0 289 46.4
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 7.3e-60 235.0 286 58.7
Cpa.g.sc138.45 Carica papaya HOM05D007044 ORTHO05D008981 2.8e-59 233.0 195 59.5
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 2.8e-59 233.0 281 46.6
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 6.2e-59 231.9 286 46.2
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 1.1e-58 231.1 287 46.7
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 1.8e-58 230.3 288 48.6
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 1.8e-58 230.3 283 47.3
MBI03_g18677_MAGBIO Magnolia biondii HOM05D007044 ORTHO05D008981 6.8e-58 228.4 216 54.2
Oeu063700.1 Olea europaea HOM05D007044 ORTHO05D008981 6.8e-58 228.4 281 46.6
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 8.9e-58 228.0 288 46.9
BcaC07g39965 Brassica carinata HOM05D007044 ORTHO05D008981 1.2e-57 227.6 230 52.2
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 1.2e-57 227.6 291 45.7
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 2.0e-57 226.9 285 46.3
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 2.0e-57 226.9 286 47.9
QL10p037666 Quercus lobata HOM05D007044 ORTHO05D008981 2.6e-57 226.5 197 59.9
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 2.6e-57 226.5 271 46.9
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 9.8e-57 224.6 216 52.8
BolC8t50802H Brassica oleracea HOM05D007044 ORTHO05D008981 9.8e-57 224.6 232 50.9
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 9.8e-57 224.6 223 53.8
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 1.3e-56 224.2 312 43.9
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 1.3e-56 224.2 301 45.8
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 1.7e-56 223.8 224 52.7
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 2.2e-56 223.4 297 43.8
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 2.2e-56 223.4 229 50.7
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 1.9e-55 220.3 291 44.0
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 3.2e-55 219.5 221 51.6
CSS0017775 Camellia sinensis var. sinensis HOM05D007044 ORTHO05D008981 4.1e-55 219.2 204 54.9
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 3.5e-54 216.1 276 48.6
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 7.8e-54 214.9 315 42.2
CAN.G10.5 Capsicum annuum HOM05D007044 ORTHO05D008981 1.7e-53 213.8 218 52.8
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 3.9e-53 212.6 298 43.3
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 1.1e-52 211.1 291 43.3
Nitab4.5_0001785g0040 Nicotiana tabacum HOM05D007044 ORTHO05D008981 2.5e-52 209.9 231 51.1
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 4.3e-52 209.1 277 46.9
BcaC07g40141 Brassica carinata HOM05D007044 ORTHO05D008981 5.6e-52 208.8 217 52.5
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 9.5e-52 208.0 275 45.5
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 2.1e-51 206.8 280 45.0
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 6.2e-51 205.3 278 43.5
PGSC0003DMG400004247 Solanum tuberosum HOM05D007044 ORTHO05D008981 4.0e-50 202.6 195 52.8
Mapoly0010s0148 Marchantia polymorpha HOM05D007044 ORTHO05D008981 4.1e-47 192.6 225 45.8
CDE06G2742 Ceratophyllum demersum HOM05D007044 ORTHO05D008981 1.7e-40 170.6 183 49.7
HanXRQChr10g0285851 Helianthus annuus HOM05D007044 ORTHO05D008981 2.1e-38 163.7 233 44.2
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 2.7e-38 163.3 163 52.8
Atru.chr3.1445 Acer truncatum HOM05D007044 ORTHO05D008981 3.5e-22 109.8 162 43.2
Thhalv10006013m.g Eutrema salsugineum HOM05D007044 ORTHO05D008981 6.0e-22 109.0 97 57.7
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 1.3e-21 107.8 213 31.5
Potri.004G135700 Populus trichocarpa HOM05D007044 ORTHO05D008981 1.8e-21 107.5 166 40.4
Sc16g0009910 Simmondsia chinensis HOM05D007044 ORTHO05D008981 1.8e-21 107.5 162 40.7
CiPaw.15G185700 Carya illinoinensis HOM05D007044 ORTHO05D008981 6.7e-21 105.5 160 42.5
CARHR166680 Cardamine hirsuta HOM05D007044 ORTHO05D008981 8.7e-21 105.1 166 43.4
Hma1.2p1_0050F.1_g029120 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 1.5e-20 104.4 153 42.5
MCO15G559 Micromonas commoda HOM05D007044 ORTHO05D008981 1.9e-20 104.0 166 41.6
ECA240G2444 Erigeron canadensis HOM05D007044 ORTHO05D008981 2.1e-19 100.5 155 41.9
Rhsim10G0120300 Rhododendron simsii HOM05D007044 ORTHO05D008981 3.7e-19 99.8 185 44.9
Hund07191 Selenicereus undatus HOM05D007044 ORTHO05D008981 1.1e-18 98.2 161 39.8
MCO07G433 Micromonas commoda HOM05D007044 ORTHO05D008981 5.3e-18 95.9 218 33.5
PRCOL_00000171 Prasinoderma coloniale HOM05D007044 ORTHO05D008981 5.8e-17 92.4 229 33.2
Nn3g20178 Nelumbo nucifera HOM05D007044 ORTHO05D008981 7.6e-17 92.0 122 45.1
CsaV3_4G029950 Cucumis sativus L. HOM05D007044 ORTHO05D008981 1.4e-15 87.8 150 40.0
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 3.2e-15 86.7 252 30.2
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 1.2e-14 84.7 231 27.3
Cpa.g.sc138.46 Carica papaya HOM05D007044 ORTHO05D008981 1.3e-13 81.3 62 58.1
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 2.3e-13 80.5 199 28.6
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 1.9e-12 77.4 191 31.4
CDE04G1829 Ceratophyllum demersum HOM05D005234 ORTHO05D006583 5.7e-12 75.9 197 29.4
arahy.Tifrunner.gnm1.ann1.8K57QZ Arachis hypogaea HOM05D001339 ORTHO05D008981 1.6e-11 74.3 124 36.3
AagrBONN_evm.TU.Sc2ySwM_368.1798 Anthoceros agrestis HOM05D007044 ORTHO05D008981 6.3e-11 72.4 62 53.2
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05D004224 ORTHO05D006437 8.2e-11 72.0 194 27.8
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 9.0e-10 68.6 221 28.1
PRCOL_00004023 Prasinoderma coloniale HOM05D007044 ORTHO05D044099 9.0e-10 68.6 202 25.7
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 3.4e-09 66.6 225 27.6
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 5.9e-09 65.9 58 56.9
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 5.9e-09 65.9 208 23.1
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 5.9e-09 65.9 209 26.8
PSO063G5764 Papaver somniferum HOM05D005234 ORTHO05D006583 1.0e-08 65.1 224 27.2
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 1.0e-08 65.1 207 24.6
FvH4_7g20720 Fragaria vesca HOM05D005234 ORTHO05D006583 1.3e-08 64.7 206 26.7
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 1.3e-08 64.7 209 23.9
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 1.3e-08 64.7 224 27.7
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 2.2e-08 63.9 204 25.5
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 5.0e-08 62.8 197 26.4
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 5.0e-08 62.8 206 24.3
MD01G1116500 Malus domestica HOM05D005234 ORTHO05D006583 5.0e-08 62.8 205 23.9
PRCOL_00000792 Prasinoderma coloniale HOM05D004224 ORTHO05D028567 5.0e-08 62.8 234 29.1
SalBow4G2780 Salvia bowleyana HOM05D005234 ORTHO05D006583 6.5e-08 62.4 231 25.1
PRCOL_00001538 Prasinoderma coloniale HOM05D007044 ORTHO05D028567 8.4e-08 62.0 237 26.2
vmacro07108 Vaccinium macrocarpon HOM05D005234 ORTHO05D006583 8.4e-08 62.0 230 26.5
Actinidia38226 Actinidia chinensis HOM05D005234 ORTHO05D006583 1.1e-07 61.6 207 25.6
CiPaw.01G279400 Carya illinoinensis HOM05D005234 ORTHO05D006583 1.1e-07 61.6 210 27.1
CBR_g3670 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-07 61.6 82 39.0
PRCOL_00002664 Prasinoderma coloniale HOM05D035247 ORTHO05D001113 1.4e-07 61.2 233 27.9
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 1.9e-07 60.8 202 26.2
Thecc.10G063300 Theobroma cacao HOM05D005234 ORTHO05D006583 2.5e-07 60.5 203 23.6
Prupe.2G224300 Prunus persica HOM05D005234 ORTHO05D006583 3.2e-07 60.1 210 26.7
unitig_26.g8857 Utricularia gibba HOM05D005234 ORTHO05D006583 5.5e-07 59.3 199 26.6
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 5.5e-07 59.3 208 24.5
Sed0019162 Sechium edule HOM05D005234 ORTHO05D006583 7.2e-07 58.9 205 24.4
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 9.3e-07 58.5 197 27.4
Phvul.007G007800 Phaseolus vulgaris HOM05D005234 ORTHO05D006583 9.3e-07 58.5 201 22.9
SGA_v2.0_scaffold455G51903 Striga asiatica HOM05D005456 ORTHO05D006805 1.2e-06 58.2 205 25.9
CBR_g54105 Chara braunii HOM05D006557 ORTHO05D008177 1.6e-06 57.8 163 28.2
MCO05G022 Micromonas commoda HOM05D007044 ORTHO05D028567 1.6e-06 57.8 160 30.0
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 2.1e-06 57.4 197 23.9
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 2.7e-06 57.0 199 25.1
AagrBONN_evm.TU.Sc2ySwM_228.1925 Anthoceros agrestis HOM05D004224 ORTHO05D016538 2.7e-06 57.0 189 26.5
Gohir.D04G060251 Gossypium hirsutum HOM05D005234 ORTHO05D006583 2.7e-06 57.0 203 23.2
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 3.5e-06 56.6 218 22.9
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 4.6e-06 56.2 225 23.1
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 4.6e-06 56.2 199 25.6
QL08p057492 Quercus lobata HOM05D005234 ORTHO05D006583 6.1e-06 55.8 223 23.3
Sc04g0007920 Simmondsia chinensis HOM05D005456 ORTHO05D006805 6.1e-06 55.8 200 25.0
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 7.9e-06 55.5 197 24.4
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 7.9e-06 55.5 197 24.4
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 7.9e-06 55.5 171 25.1
MELO3C025470.2 Cucumis melo HOM05D005234 ORTHO05D006583 7.9e-06 55.5 210 23.8
Gohir.A05G352700 Gossypium hirsutum HOM05D005234 ORTHO05D006583 7.9e-06 55.5 202 21.3
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 7.9e-06 55.5 205 25.4
Medtr1g115980 Medicago truncatula HOM05D005234 ORTHO05D006583 7.9e-06 55.5 203 21.2
SGA_v2.0_scaffold193G40685 Striga asiatica HOM05D005234 ORTHO05D006583 7.9e-06 55.5 226 26.1


User provided reference genes

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