Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 6.6e-139 497.3 236 100.0
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 5.8e-111 404.4 246 80.5
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.9e-102 375.6 229 79.5
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 2.1e-92 342.8 242 74.0
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.6e-92 341.7 242 74.0
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.9e-92 340.9 242 73.6
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.1e-91 338.2 242 72.3
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.4e-90 334.3 232 73.3
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.9e-82 309.7 219 73.5
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 1.3e-78 297.0 247 61.1
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 3.8e-78 295.4 242 63.2
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 8.8e-75 284.3 243 58.0
FvH4_2g38461 Fragaria vesca HOM05D007529 ORTHO05D007451 2.0e-74 283.1 179 79.9
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 1.8e-67 260.0 175 73.7
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.8e-64 250.0 238 53.8
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 3.1e-64 249.2 241 52.7
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 3.1e-64 249.2 244 50.8
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 2.9e-62 242.7 247 49.4
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.1e-60 236.5 241 49.8
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 3.6e-60 235.7 247 49.8
SalBow1G4167 Salvia bowleyana HOM05D007529 ORTHO05D007451 3.6e-60 235.7 239 52.3
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.4e-59 233.8 233 48.9
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 1.8e-59 233.4 238 52.9
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 2.6e-58 229.6 237 47.7
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 3.3e-58 229.2 245 50.2
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 3.3e-58 229.2 242 48.8
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 5.7e-58 228.4 245 50.2
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 2.8e-57 226.1 240 50.0
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 6.3e-57 224.9 243 49.8
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.1e-56 224.2 237 47.3
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 1.8e-56 223.4 239 48.5
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 3.1e-56 222.6 237 47.3
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 5.3e-56 221.9 238 49.6
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 7.0e-56 221.5 246 47.2
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 7.0e-56 221.5 245 48.2
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 1.2e-55 220.7 242 46.7
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.2e-55 220.7 257 46.7
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 1.6e-55 220.3 244 48.4
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 3.5e-55 219.2 232 48.3
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 4.5e-55 218.8 205 52.7
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 1.7e-54 216.9 199 53.3
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 8.5e-54 214.5 239 49.0
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.1e-53 214.2 245 46.9
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 1.9e-53 213.4 249 45.0
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 4.2e-53 212.2 238 49.2
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 5.5e-53 211.8 265 44.2
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 7.2e-53 211.5 250 46.4
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 1.6e-52 210.3 247 47.4
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 1.6e-52 210.3 262 43.1
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.0e-51 207.6 232 44.4
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 1.0e-51 207.6 263 42.6
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 1.4e-51 207.2 244 44.7
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 1.8e-51 206.8 241 46.1
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 2.3e-51 206.5 265 43.4
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 8.8e-51 204.5 244 44.3
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 1.3e-49 200.7 247 43.7
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 1.7e-49 200.3 252 44.0
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 2.2e-49 199.9 239 43.9
FAN12G3498 Fragaria x ananassa HOM05D007529 ORTHO05D007451 8.3e-49 198.0 159 68.6
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 2.4e-48 196.4 239 44.4
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 1.3e-46 190.7 199 47.7
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 6.5e-46 188.3 257 41.6
Ciclev10006854m.g Citrus clementina HOM05D007529 ORTHO05D007451 5.5e-45 185.3 244 45.5
FvH4_4g15602 Fragaria vesca HOM05D007529 ORTHO05D007451 5.5e-45 185.3 160 66.2
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 9.4e-45 184.5 243 42.8
DCAR_013619 Daucus carota HOM05D007529 ORTHO05D007451 4.7e-44 182.2 251 39.0
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 1.0e-43 181.0 261 40.2
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 7.7e-39 164.9 205 44.4
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 5.0e-38 162.2 247 37.2
Sabra04G0050900 Salix brachista HOM05D007529 ORTHO05D007451 8.0e-36 154.8 220 40.9
Aqoxy7G01198 Aquilegia oxysepala HOM05D007529 ORTHO05D007451 1.8e-35 153.7 211 40.8
Haze_19770 Corylus avellana HOM05D007529 ORTHO05D007451 1.2e-34 151.0 165 49.7
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.7e-33 147.1 249 39.4
CiPaw.09G042800 Carya illinoinensis HOM05D007529 ORTHO05D007451 4.9e-33 145.6 240 39.6
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 8.3e-33 144.8 245 38.0
Nn1g04791 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.4e-32 143.3 236 36.0
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 3.2e-32 142.9 235 33.6
FAN22G2112 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.1e-32 142.5 88 77.3
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.7e-30 137.1 249 36.5
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 9.5e-29 131.3 93 68.8
unitig_899.g15088 Utricularia gibba HOM05D007529 ORTHO05D007451 1.6e-28 130.6 165 42.4
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 1.3e-25 120.9 243 33.3
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 1.3e-25 120.9 125 48.0
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 1.4e-24 117.5 245 32.2
Nitab4.5_0000826g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.4e-24 117.5 159 42.8
Potri.004G077301 Populus trichocarpa HOM05D007529 ORTHO05D007451 3.2e-24 116.3 147 44.2
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 4.1e-24 115.9 241 29.9
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 4.6e-23 112.5 242 32.2
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 7.8e-23 111.7 174 40.2
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 1.0e-22 111.3 245 31.8
FAN17G0844 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.3e-22 110.9 95 62.1
Nn1g01084 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.3e-22 110.2 103 51.5
AUR62026141 Chenopodium quinoa HOM05D007529 ORTHO05D007451 3.9e-22 109.4 131 45.8
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 5.6e-21 105.5 119 46.2
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 4.7e-20 102.4 244 29.9
THA.LOC104825174 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.8e-19 100.5 133 37.6
CDE11G0566 Ceratophyllum demersum HOM05D007529 ORTHO05D007451 6.8e-19 98.6 162 35.8
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.5e-18 97.4 243 29.6
SEGI_22599 Sequoiadendron giganteum HOM05D007529 ORTHO05D007451 1.3e-17 94.4 250 28.4
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 4.9e-17 92.4 242 28.9
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 6.4e-17 92.0 241 29.9
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 8.3e-17 91.7 242 29.3
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.9e-16 90.5 245 29.8
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 2.4e-16 90.1 241 27.8
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 2.4e-16 90.1 245 28.2
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 7.1e-16 88.6 242 29.3
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 1.6e-15 87.4 240 26.7
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 1.6e-15 87.4 240 26.7
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 2.7e-15 86.7 154 34.4
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 2.7e-15 86.7 244 27.9
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 3.5e-15 86.3 258 27.1
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 7.8e-15 85.1 241 28.2
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 1.3e-14 84.3 267 25.8
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 2.3e-14 83.6 241 26.1
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 5.1e-14 82.4 154 33.1
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 1.1e-13 81.3 154 31.8
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 3.3e-13 79.7 241 28.2
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 3.3e-13 79.7 241 28.2
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 4.3e-13 79.3 241 27.0
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 4.3e-13 79.3 241 27.0
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 5.6e-13 79.0 152 32.2
Zm00001eb150670 Zea mays HOM05D007529 ORTHO05D007451 5.6e-13 79.0 265 26.8
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 9.5e-13 78.2 154 32.5
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 1.6e-12 77.4 153 30.7
ClCG04G003940 Citrullus lanatus HOM05D007529 ORTHO05D007451 3.1e-11 73.2 82 42.7
Cpa.g.sc5.217 Carica papaya HOM05D007529 ORTHO05D007451 6.8e-11 72.0 70 47.1
MELO3C014210.2 Cucumis melo HOM05D007529 ORTHO05D007451 1.2e-10 71.2 98 37.8
CsaV3_4G021970 Cucumis sativus L. HOM05D007529 ORTHO05D007451 1.5e-10 70.9 49 59.2
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 1.2e-07 61.2 296 22.0
Cpa.g.sc5.218 Carica papaya HOM05D007529 ORTHO05D007451 1.7e-06 57.4 65 41.5
AagrBONN_evm.TU.Sc2ySwM_368.1069 Anthoceros agrestis HOM05D027965 ORTHO05D007451 3.0e-06 56.6 282 22.0


User provided reference genes

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