Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 2.6e-46 188.3 93 100.0
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 3.9e-42 174.5 90 95.6
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 2.5e-41 171.8 90 93.3
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.3e-41 171.0 90 93.3
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.6e-41 170.6 90 92.2
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 7.3e-41 170.2 90 92.2
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 7.3e-41 170.2 90 91.1
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.2e-40 169.5 90 92.2
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.6e-40 169.1 90 91.1
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.6e-40 169.1 90 91.1
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.1e-40 168.7 90 91.1
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 2.1e-40 168.7 90 91.1
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 2.1e-40 168.7 90 92.2
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 2.8e-40 168.3 90 90.0
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.8e-40 168.3 88 93.2
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.8e-40 168.3 90 91.1
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 3.6e-40 167.9 90 92.2
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 4.7e-40 167.5 90 91.1
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 4.7e-40 167.5 90 91.1
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 6.2e-40 167.2 90 90.0
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 6.2e-40 167.2 90 90.0
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.0e-40 166.8 90 90.0
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 8.0e-40 166.8 90 90.0
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 8.0e-40 166.8 87 93.1
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 8.0e-40 166.8 90 91.1
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 8.0e-40 166.8 90 90.0
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 8.0e-40 166.8 90 90.0
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 90.0
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 90.0
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 90.0
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 88.9
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 90.0
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 90.0
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.0e-39 166.4 90 90.0
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 1.4e-39 166.0 90 90.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.4e-39 166.0 90 90.0
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.4e-39 166.0 90 88.9
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 1.4e-39 166.0 90 90.0
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 1.4e-39 166.0 90 90.0
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.8e-39 165.6 89 92.1
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.8e-39 165.6 90 90.0
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.8e-39 165.6 90 90.0
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.8e-39 165.6 90 90.0
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 2.3e-39 165.2 90 90.0
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.3e-39 165.2 90 90.0
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 2.3e-39 165.2 90 90.0
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.3e-39 165.2 90 87.8
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.1e-39 164.9 90 87.8
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.1e-39 164.9 90 88.9
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 3.1e-39 164.9 90 88.9
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.1e-39 164.9 90 88.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 3.1e-39 164.9 90 88.9
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 4.0e-39 164.5 90 90.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 5.2e-39 164.1 90 90.0
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 5.2e-39 164.1 90 90.0
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 5.2e-39 164.1 90 88.9
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 6.8e-39 163.7 90 87.8
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 6.8e-39 163.7 88 92.0
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 6.8e-39 163.7 90 87.8
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 6.8e-39 163.7 90 88.9
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 6.8e-39 163.7 89 88.8
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 8.9e-39 163.3 90 88.9
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 8.9e-39 163.3 90 90.0
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 8.9e-39 163.3 90 87.8
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.2e-38 162.9 90 87.8
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.2e-38 162.9 90 86.7
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.2e-38 162.9 90 86.7
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.2e-38 162.9 90 87.8
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.2e-38 162.9 90 87.8
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.2e-38 162.9 90 87.8
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.5e-38 162.5 90 88.9
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.5e-38 162.5 90 86.7
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 2.6e-38 161.8 90 87.8
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.6e-38 161.8 90 87.8
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.4e-38 161.4 90 88.9
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 3.4e-38 161.4 90 86.7
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 3.4e-38 161.4 90 86.7
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 4.4e-38 161.0 90 84.4
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 4.4e-38 161.0 90 87.8
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 5.8e-38 160.6 90 86.7
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 5.8e-38 160.6 90 86.7
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 5.8e-38 160.6 87 89.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 7.5e-38 160.2 90 86.7
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 7.5e-38 160.2 90 85.6
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 85.6
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 9.8e-38 159.8 90 84.4
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 9.8e-38 159.8 88 88.6
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 9.8e-38 159.8 90 84.4
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.3e-37 159.5 90 85.6
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.3e-37 159.5 90 85.6
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.7e-37 159.1 90 83.3
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 1.7e-37 159.1 88 88.6
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.7e-37 159.1 90 83.3
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.7e-37 159.1 90 85.6
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 2.2e-37 158.7 90 85.6
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 2.9e-37 158.3 90 84.4
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.9e-37 158.3 90 83.3
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 2.9e-37 158.3 90 84.4
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.7e-37 157.9 90 84.4
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 6.4e-37 157.1 90 83.3
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 6.4e-37 157.1 90 83.3
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 8.3e-37 156.8 90 83.3
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 8.3e-37 156.8 90 83.3
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 8.3e-37 156.8 90 85.6
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 8.3e-37 156.8 90 85.6
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 8.3e-37 156.8 90 85.6
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 8.3e-37 156.8 90 85.6
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.4e-36 156.0 90 84.4
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.4e-36 156.0 90 84.4
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.4e-36 156.0 86 87.2
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.2e-35 152.9 85 85.9
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 3.5e-35 151.4 90 84.4
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.0e-34 149.8 77 92.2
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.7e-34 149.1 90 83.3
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.7e-34 149.1 90 80.0
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 3.0e-34 148.3 79 88.6
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.9e-34 147.9 80 90.0
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.5e-33 146.0 86 81.4
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.5e-33 145.2 88 80.7
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.4e-30 134.8 151 53.0
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 8.6e-26 120.2 63 96.8
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 4.3e-25 117.9 90 62.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 9.5e-25 116.7 90 64.4
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.5e-22 109.4 56 87.5
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 2.0e-22 109.0 88 62.5
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 7.6e-22 107.1 54 90.7
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 7.6e-22 107.1 60 90.0
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 6.4e-21 104.0 55 87.3
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.4e-21 104.0 70 80.0
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.0e-18 96.7 85 52.9
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 6.6e-18 94.0 55 81.8
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 1.1e-17 93.2 88 58.0
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.1e-15 86.7 44 90.9
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 8.9e-15 83.6 55 69.1
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 8.4e-13 77.0 90 47.8
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.1e-12 76.6 63 60.3
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.0e-10 70.1 88 46.6
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.3e-10 69.7 67 47.8
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 8.7e-10 67.0 48 68.8
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 2.8e-08 62.0 35 85.7
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.2e-06 56.6 54 57.4
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 2.6e-06 55.5 43 65.1
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 5.8e-06 54.3 88 37.5
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 5.8e-06 54.3 99 42.4


User provided reference genes

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