Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 1.1e-84 316.6 159 100.0
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 2.6e-83 312.0 158 98.1
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 6.1e-72 274.2 159 88.1
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 2.3e-71 272.3 159 88.1
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 3.6e-48 195.3 217 52.5
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.2e-43 180.3 116 84.5
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 6.6e-42 174.5 189 54.0
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 5.6e-41 171.4 190 53.7
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 4.7e-40 168.3 203 49.8
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 5.2e-39 164.9 228 46.1
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 1.2e-38 163.7 158 62.0
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 3.4e-38 162.2 204 47.1
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 5.8e-38 161.4 228 45.6
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 3.7e-37 158.7 159 59.7
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 4.9e-37 158.3 158 59.5
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 4.9e-37 158.3 158 56.3
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 4.1e-36 155.2 180 48.3
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 1.2e-35 153.7 111 67.6
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 1.6e-35 153.3 189 49.7
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 2.1e-35 152.9 107 71.0
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 3.5e-35 152.1 113 64.6
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 1.0e-34 150.6 189 49.2
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 3.0e-34 149.1 97 72.2
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 3.0e-34 149.1 97 72.2
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 3.9e-34 148.7 89 79.8
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 5.1e-34 148.3 96 71.9
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 6.6e-34 147.9 113 67.3
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 6.6e-34 147.9 183 43.7
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 8.6e-34 147.5 108 66.7
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 1.5e-33 146.7 214 41.6
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 1.9e-33 146.4 146 54.1
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 3.3e-33 145.6 82 79.3
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 3.3e-33 145.6 131 58.0
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.6e-33 144.8 134 59.0
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 5.6e-33 144.8 215 46.0
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 7.3e-33 144.4 94 68.1
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 9.5e-33 144.1 214 44.9
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 2.8e-32 142.5 88 75.0
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 4.7e-32 141.7 213 42.7
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 4.7e-32 141.7 132 54.5
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 6.2e-32 141.4 155 47.7
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 8.1e-32 141.0 141 54.6
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 1.1e-31 140.6 108 64.8
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.1e-31 140.6 97 69.1
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 1.8e-31 139.8 86 72.1
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 1.8e-31 139.8 131 59.5
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 2.3e-31 139.4 119 61.3
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 4.0e-31 138.7 109 63.3
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 5.2e-31 138.3 84 72.6
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 8.9e-31 137.5 126 57.1
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 8.9e-31 137.5 143 48.3
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 8.9e-31 137.5 213 40.8
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.2e-30 137.1 133 56.4
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 1.2e-30 137.1 183 44.8
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 1.5e-30 136.7 154 46.1
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.5e-30 136.7 133 54.9
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 2.0e-30 136.3 109 61.5
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 3.4e-30 135.6 150 50.0
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 4.4e-30 135.2 83 73.5
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 4.4e-30 135.2 184 42.9
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 7.6e-30 134.4 108 62.0
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 7.6e-30 134.4 176 44.9
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 9.9e-30 134.0 94 66.0
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 9.9e-30 134.0 176 45.5
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.7e-29 133.3 96 66.7
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 1.7e-29 133.3 158 43.7
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 1.7e-29 133.3 102 60.8
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 2.2e-29 132.9 98 67.3
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 3.7e-29 132.1 156 48.7
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 3.7e-29 132.1 130 56.9
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 3.7e-29 132.1 115 57.4
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 3.7e-29 132.1 122 51.6
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 6.4e-29 131.3 126 52.4
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 6.4e-29 131.3 100 63.0
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 6.4e-29 131.3 197 42.1
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 8.4e-29 131.0 131 55.7
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 8.4e-29 131.0 136 50.0
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 1.4e-28 130.2 122 52.5
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.9e-28 129.8 93 65.6
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 2.4e-28 129.4 104 62.5
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 3.2e-28 129.0 100 61.0
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 7.1e-28 127.9 100 61.0
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 7.1e-28 127.9 131 51.1
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 7.1e-28 127.9 122 51.6
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 1.6e-27 126.7 100 60.0
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 1.6e-27 126.7 100 60.0
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 2.1e-27 126.3 100 61.0
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.7e-27 125.9 122 50.0
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 2.7e-27 125.9 116 53.4
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 4.6e-27 125.2 180 42.8
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 4.6e-27 125.2 202 38.6
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 1.3e-26 123.6 170 44.1
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 5.1e-26 121.7 100 58.0
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 6.6e-26 121.3 100 59.0
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 8.6e-26 120.9 160 44.4
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 1.1e-25 120.6 172 43.0
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.1e-25 120.6 110 52.7
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 5.6e-25 118.2 132 50.0
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 7.3e-25 117.9 186 38.7
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 3.6e-24 115.5 160 42.5
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.1e-23 112.5 80 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 9.9e-22 107.5 80 58.8
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 3.2e-20 102.4 81 50.6
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 3.2e-20 102.4 70 61.4
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 6.0e-19 98.2 106 47.2
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 1.1e-17 94.0 42 97.6
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.5e-17 93.6 91 49.5
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.5e-17 93.6 91 49.5
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 3.3e-17 92.4 60 68.3
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 3.6e-16 89.0 60 63.3
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 2.4e-12 76.3 54 59.3
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 2.7e-11 72.8 98 46.9
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 2.7e-11 72.8 129 41.9
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.0e-10 70.9 42 71.4
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.3e-10 69.7 182 34.6


User provided reference genes

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