Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0482691 Rosa chinensis HOM05D000309 ORTHO05D344647 1.0e-26 122.5 56 100.0
Actinidia29980 Actinidia chinensis HOM05D000309 ORTHO05D000271 1.1e-07 59.3 45 57.8
Aa31sc413G20 Aethionema arabicum HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
CANSAT80G0275 Cannabis sativa HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
FvH4_4g05990 Fragaria vesca HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
FAN07G1709 Fragaria x ananassa HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
FAN12G0421 Fragaria x ananassa HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
MD13G1232100 Malus domestica HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
MD16G1237000 Malus domestica HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
Prupe.1G063400 Prunus persica HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
RcHm_v2.0_Chr4g0397221 Rosa chinensis HOM05D000309 ORTHO05D000271 1.9e-07 58.5 45 57.8
CiPaw.15G161500 Carya illinoinensis HOM05D000309 ORTHO05D000271 2.4e-07 58.2 42 61.9
Haze_19093 Corylus avellana HOM05D000309 ORTHO05D000271 2.4e-07 58.2 42 61.9
Lj1C1062T7 Lonicera japonica HOM05D000309 ORTHO05D000271 2.4e-07 58.2 38 60.5
Psat1g051480 Pisum sativum HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Potri.006G079300 Populus trichocarpa HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Sabra06G0060000 Salix brachista HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Sabra18G0122500 Salix brachista HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Sabra18G0122900 Salix brachista HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Sabra18G0125200 Salix brachista HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Sabra18G0125800 Salix brachista HOM05D000309 ORTHO05D000271 2.4e-07 58.2 45 57.8
Aqoxy7G02653 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
BcaB06g26494 Brassica carinata HOM05D000309 ORTHO05D000271 3.2e-07 57.8 45 57.8
CSS0008081 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
CSS0028011 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
FAN17G1622 Fragaria x ananassa HOM05D000309 ORTHO05D000271 3.2e-07 57.8 45 57.8
Gohir.A08G015900 Gossypium hirsutum HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
Gohir.D08G026100 Gossypium hirsutum HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
Gorai.004G022500 Gossypium raimondii HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
Lj2g0015183 Lotus japonicus HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
Lalb_Chr22g0361651 Lupinus albus HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
Manes.02G223000 Manihot esculenta HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
PSO063G5658 Papaver somniferum HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
PSO170G2521 Papaver somniferum HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
SalBow6G0376 Salvia bowleyana HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
Thecc.08G171900 Theobroma cacao HOM05D000309 ORTHO05D000271 3.2e-07 57.8 38 63.2
vmacro09577 Vaccinium macrocarpon HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
GSVIVG01029525001 Vitis vinifera HOM05D000309 ORTHO05D000271 3.2e-07 57.8 42 59.5
Atru.chr6.1466 Acer truncatum HOM05D000309 ORTHO05D000271 4.1e-07 57.4 42 59.5
AUR62022386 Chenopodium quinoa HOM05D000309 ORTHO05D000271 4.1e-07 57.4 45 55.6
AUR62027296 Chenopodium quinoa HOM05D000309 ORTHO05D000271 4.1e-07 57.4 45 55.6
Eucgr.G00958 Eucalyptus grandis HOM05D000309 ORTHO05D000271 4.1e-07 57.4 42 59.5
Gohir.A05G115700 Gossypium hirsutum HOM05D000309 ORTHO05D000271 4.1e-07 57.4 42 59.5
SGA_v2.0_scaffold14G06983 Striga asiatica HOM05D000309 ORTHO05D000271 4.1e-07 57.4 38 63.2
GSVIVG01029527001 Vitis vinifera HOM05D000309 ORTHO05D000271 4.1e-07 57.4 42 59.5
arahy.Tifrunner.gnm1.ann1.T5AYFK Arachis hypogaea HOM05D000309 ORTHO05D000271 5.4e-07 57.0 28 82.1
Cpa.g.sc176.31 Carica papaya HOM05D000309 ORTHO05D000271 5.4e-07 57.0 42 59.5
CDE05G2327 Ceratophyllum demersum HOM05D000309 ORTHO05D002783 5.4e-07 57.0 42 59.5
Cc00_g00030 Coffea canephora HOM05D000309 ORTHO05D000271 5.4e-07 57.0 42 59.5
Duzib192G0602 Durio zibethinus HOM05D000309 ORTHO05D000271 5.4e-07 57.0 42 59.5
Hma1.2p1_1704F.1_g298320 Hydrangea macrophylla HOM05D000309 ORTHO05D000271 5.4e-07 57.0 38 63.2
Potri.018G148800 Populus trichocarpa HOM05D000309 ORTHO05D000271 5.4e-07 57.0 45 57.8
QL11p008104 Quercus lobata HOM05D000309 ORTHO05D000271 5.4e-07 57.0 42 59.5
VMungo0464G1032 Vigna mungo HOM05D000309 ORTHO05D000271 5.4e-07 57.0 35 68.6
Ah.12g056140 Amaranthus hybridus HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
arahy.Tifrunner.gnm1.ann1.F6QEBB Arachis hypogaea HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
arahy.Tifrunner.gnm1.ann1.FNNX8Q Arachis hypogaea HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
arahy.Tifrunner.gnm1.ann1.GI3VL1 Arachis hypogaea HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
arahy.Tifrunner.gnm1.ann1.K9HTAT Arachis hypogaea HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
MSTRG.19399 Avicennia marina HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
EL10Ac5g11880 Beta vulgaris HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
CAN.G715.9 Capsicum annuum HOM05D000309 ORTHO05D000271 7.0e-07 56.6 45 55.6
COL.COLO4_20605 Corchorus olitorius HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Dinv12616 Davidia involucrata HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Dinv26481 Davidia involucrata HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Migut.J00843 Erythranthe guttata HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
MBI13_g33566_MAGBIO Magnolia biondii HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
MD17G1158900 Malus domestica HOM05D000309 ORTHO05D000271 7.0e-07 56.6 28 78.6
Nn2g10230 Nelumbo nucifera HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Nn4g24323 Nelumbo nucifera HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Nn8g41141 Nelumbo nucifera HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Nitab4.5_0000299g0280 Nicotiana tabacum HOM05D000309 ORTHO05D000271 7.0e-07 56.6 45 55.6
Oeu000963.2 Olea europaea HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
Oeu057460.1 Olea europaea HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
Peaxi162Scf00263g00924 Petunia axillaris HOM05D000309 ORTHO05D000271 7.0e-07 56.6 45 55.6
Potri.007G002200 Populus trichocarpa HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
PGR044G2300 Punica granatum HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Sabra07G0001600 Salix brachista HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
SalBow6G1298 Salvia bowleyana HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
Sopen04g026930 Solanum pennellii HOM05D000309 ORTHO05D000271 7.0e-07 56.6 45 55.6
Thecc.06G053400 Theobroma cacao HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
TAR383G0917 Trochodendron aralioides HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 65.7
GSVIVG01015994001 Vitis vinifera HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
GSVIVG01029514001 Vitis vinifera HOM05D000309 ORTHO05D000271 7.0e-07 56.6 35 68.6
BcaC06g35530 Brassica carinata HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 55.6
A07p08970 Brassica napus HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 55.6
C07p13810 Brassica napus HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 55.6
BolC7t41883H Brassica oleracea HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 55.6
BraA07t28687Z Brassica rapa HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 55.6
CSS0039525 Camellia sinensis var. sinensis HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 62.9
ECA232G3294 Erigeron canadensis HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 55.6
FvH4_6g36510 Fragaria vesca HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
FAN02G3763 Fragaria x ananassa HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
FAN05G3285 Fragaria x ananassa HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
FAN14G0744 Fragaria x ananassa HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
Nitab4.5_0007750g0010 Nicotiana tabacum HOM05D000309 ORTHO05D000271 9.2e-07 56.2 45 53.3
RcHm_v2.0_Chr2g0148711 Rosa chinensis HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
RcHm_v2.0_Chr2g0148821 Rosa chinensis HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
RcHm_v2.0_Chr2g0148951 Rosa chinensis HOM05D000309 ORTHO05D000271 9.2e-07 56.2 35 68.6
Hund26801 Selenicereus undatus HOM05D000309 ORTHO05D000271 9.2e-07 56.2 39 59.0
TWI75G1227 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 9.2e-07 56.2 42 57.1
GSVIVG01032285001 Vitis vinifera HOM05D000309 ORTHO05D000271 9.2e-07 56.2 42 59.5
MSTRG.26516 Avicennia marina HOM05D000309 ORTHO05D000271 1.2e-06 55.8 42 54.8
ClCG06G001600 Citrullus lanatus HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
MELO3C022374.2 Cucumis melo HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
Gohir.D05G116100 Gossypium hirsutum HOM05D000309 ORTHO05D000271 1.2e-06 55.8 42 57.1
Gorai.009G120100 Gossypium raimondii HOM05D000309 ORTHO05D000271 1.2e-06 55.8 42 57.1
MD00G1220900 Malus domestica HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
MD17G1246000 Malus domestica HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
MD17G1246500 Malus domestica HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
Medtr5g008810 Medicago truncatula HOM05D000309 ORTHO05D000271 1.2e-06 55.8 38 60.5
Nitab4.5_0004819g0020 Nicotiana tabacum HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
Prupe.3G026100 Prunus persica HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
Sed0026057 Sechium edule HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
SGA_v2.0_scaffold31G12713 Striga asiatica HOM05D000309 ORTHO05D000271 1.2e-06 55.8 28 78.6
Ah.12g058890 Amaranthus hybridus HOM05D000309 ORTHO05D000271 1.6e-06 55.5 35 65.7
AL3G44070 Arabidopsis lyrata HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
AT2G07050 Arabidopsis thaliana HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
A03p44730 Brassica napus HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
C03p55580 Brassica napus HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
BolC3t17835H Brassica oleracea HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
BraA03t13608Z Brassica rapa HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
Carub.0003s2739 Capsella rubella HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
CARHR103980 Cardamine hirsuta HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
Thhalv10003155m.g Eutrema salsugineum HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
FAN22G0498 Fragaria x ananassa HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
Phvul.004G178300 Phaseolus vulgaris HOM05D000309 ORTHO05D000271 1.6e-06 55.5 35 62.9
Sp3g25300 Schrenkiella parvula HOM05D000309 ORTHO05D000271 1.6e-06 55.5 45 55.6
TPR.G2705 Trifolium pratense HOM05D000309 ORTHO05D000271 1.6e-06 55.5 38 60.5
Ca_25638_v3 Cicer arietinum L. HOM05D000309 ORTHO05D000271 2.1e-06 55.1 42 57.1
Glyma.01G001300 Glycine max HOM05D000309 ORTHO05D000271 2.1e-06 55.1 35 62.9
Os02g0139700 Oryza sativa ssp. japonica HOM05D000309 ORTHO05D000271 2.1e-06 55.1 35 68.6
Solyc04g070980.4 Solanum lycopersicum HOM05D000309 ORTHO05D000271 2.1e-06 55.1 43 55.8
ATR0626G349 Amborella trichopoda HOM05D000309 ORTHO05D000271 2.7e-06 54.7 34 70.6
Aqoxy1G01425 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 2.7e-06 54.7 38 60.5
HanXRQChr09g0260661 Helianthus annuus HOM05D000309 ORTHO05D000271 2.7e-06 54.7 45 53.3
vmacro20758 Vaccinium macrocarpon HOM05D000309 ORTHO05D000271 2.7e-06 54.7 28 75.0
Gohir.D10G164450 Gossypium hirsutum HOM05D000309 ORTHO05D000271 3.5e-06 54.3 28 75.0
MD00G1130000 Malus domestica HOM05D000309 ORTHO05D000271 3.5e-06 54.3 32 68.8
Os02g0139500 Oryza sativa ssp. japonica HOM05D000309 ORTHO05D000271 3.5e-06 54.3 28 75.0
TPR.G21349 Trifolium pratense HOM05D000309 ORTHO05D000271 3.5e-06 54.3 38 60.5
unitig_699.g19400 Utricularia gibba HOM05D000309 ORTHO05D000271 3.5e-06 54.3 35 62.9
Ah.02g117340 Amaranthus hybridus HOM05D000309 ORTHO05D000271 4.6e-06 53.9 34 67.6
ClCG09G001740 Citrullus lanatus HOM05D000309 ORTHO05D000271 4.6e-06 53.9 28 75.0
Ciclev10031300m.g Citrus clementina HOM05D000309 ORTHO05D000271 4.6e-06 53.9 36 61.1
MELO3C024270.2 Cucumis melo HOM05D000309 ORTHO05D000271 4.6e-06 53.9 28 75.0
CsaV3_7G033590 Cucumis sativus L. HOM05D000309 ORTHO05D000271 4.6e-06 53.9 28 75.0
Gorai.012G039000 Gossypium raimondii HOM05D000309 ORTHO05D000271 4.6e-06 53.9 30 70.0
MBI13_g31570_MAGBIO Magnolia biondii HOM05D000309 ORTHO05D000271 4.6e-06 53.9 34 67.6
Manes.02G227300 Manihot esculenta HOM05D000309 ORTHO05D000271 4.6e-06 53.9 34 67.6
SHI03139 Sapria himalayana HOM05D000309 ORTHO05D000271 4.6e-06 53.9 28 75.0
Sed0009515 Sechium edule HOM05D000309 ORTHO05D000271 4.6e-06 53.9 28 75.0
TWI63G1104 Tripterygium wilfordii HOM05D000309 ORTHO05D000271 6.0e-06 53.5 34 67.6
HPP92_015818 Vanilla planifolia HOM05D000309 ORTHO05D000271 6.0e-06 53.5 34 67.6
GSVIVG01029468001 Vitis vinifera HOM05D000309 ORTHO05D000271 6.0e-06 53.5 34 67.6
Aqoxy4G01427 Aquilegia oxysepala HOM05D000309 ORTHO05D000271 7.8e-06 53.1 27 77.8
CsaV3_6G007580 Cucumis sativus L. HOM05D000309 ORTHO05D000271 7.8e-06 53.1 27 77.8
Duzib170G1095 Durio zibethinus HOM05D000309 ORTHO05D000271 7.8e-06 53.1 35 62.9
Thhalv10002412m.g Eutrema salsugineum HOM05D000309 ORTHO05D000271 7.8e-06 53.1 45 53.3
QL05p086035 Quercus lobata HOM05D000309 ORTHO05D000271 7.8e-06 53.1 27 77.8
QL05p087040 Quercus lobata HOM05D000309 ORTHO05D000271 7.8e-06 53.1 27 77.8
QL10p032941 Quercus lobata HOM05D000309 ORTHO05D000271 7.8e-06 53.1 27 77.8
RcHm_v2.0_Chr4g0397321 Rosa chinensis HOM05D000309 ORTHO05D000271 7.8e-06 53.1 29 72.4
SMO002G0015 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 7.8e-06 53.1 45 53.3
SMO002G0017 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 7.8e-06 53.1 45 53.3
SMO356G0245 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 7.8e-06 53.1 45 53.3
SMO356G0651 Selaginella moellendorffii HOM05D000309 ORTHO05D000271 7.8e-06 53.1 45 53.3
Thecc.09G200400 Theobroma cacao HOM05D000309 ORTHO05D000271 7.8e-06 53.1 39 64.1


User provided reference genes

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