Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0482221 Rosa chinensis HOM05D007490 ORTHO05D008750 1.0e-107 393.7 239 100.0
FvH4_6g23771 Fragaria vesca HOM05D007490 ORTHO05D008750 3.3e-69 265.8 257 69.3
FAN02G3575 Fragaria x ananassa HOM05D007490 ORTHO05D008750 1.2e-55 220.7 234 66.2
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 1.9e-32 143.7 256 44.1
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 7.1e-32 141.7 251 41.8
FAN14G3182 Fragaria x ananassa HOM05D007490 ORTHO05D008750 4.3e-29 132.5 125 63.2
CANSAT80G2830 Cannabis sativa HOM05D007490 ORTHO05D008750 6.2e-28 128.6 211 42.2
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 1.1e-27 127.9 238 37.8
FAN09G1636 Fragaria x ananassa HOM05D007490 ORTHO05D008750 1.4e-27 127.5 129 58.9
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 1.4e-27 127.5 240 38.8
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 2.4e-27 126.7 205 46.8
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 4.5e-26 122.5 237 36.7
Dinv39599 Davidia involucrata HOM05D007490 ORTHO05D008750 3.8e-25 119.4 244 40.2
Nn7g36272 Nelumbo nucifera HOM05D007490 ORTHO05D008750 8.4e-25 118.2 254 42.1
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 1.9e-24 117.1 173 45.1
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 4.2e-24 115.9 184 42.4
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 1.3e-22 110.9 176 42.6
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 1.8e-22 110.5 176 42.6
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 3.9e-22 109.4 199 41.7
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 6.7e-22 108.6 202 38.1
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 1.5e-21 107.5 87 63.2
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 7.4e-21 105.1 244 36.9
PGR004G2251 Punica granatum HOM05D007490 ORTHO05D008750 7.4e-21 105.1 181 38.7
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 1.3e-20 104.4 70 71.4
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 8.2e-20 101.7 68 70.6
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 8.2e-20 101.7 250 34.0
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 8.2e-20 101.7 151 43.7
CiPaw.09G038000 Carya illinoinensis HOM05D007490 ORTHO05D008750 1.1e-19 101.3 228 35.5
Sopen04g007810 Solanum pennellii HOM05D007490 ORTHO05D008750 1.8e-19 100.5 161 44.7
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 1.8e-19 100.5 161 44.1
Solyc04g015730.3 Solanum lycopersicum HOM05D007490 ORTHO05D008750 5.3e-19 99.0 72 69.4
Rhsim03G0022200 Rhododendron simsii HOM05D007490 ORTHO05D008750 3.4e-18 96.3 222 34.7
TWI74G0148 Tripterygium wilfordii HOM05D007490 ORTHO05D008750 3.4e-18 96.3 74 68.9
Nitab4.5_0005611g0010 Nicotiana tabacum HOM05D007490 ORTHO05D008750 4.5e-18 95.9 160 43.1
Potri.006G050900 Populus trichocarpa HOM05D007490 ORTHO05D008750 4.5e-18 95.9 219 34.7
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 2.2e-17 93.6 171 40.4
AUR62024445 Chenopodium quinoa HOM05D007490 ORTHO05D008750 3.8e-17 92.8 68 67.6
Cc06_g17080 Coffea canephora HOM05D007490 ORTHO05D008750 4.9e-17 92.4 186 45.7
TAR636G1914 Trochodendron aralioides HOM05D007490 ORTHO05D008750 1.1e-16 91.3 224 40.6
AUR62026035 Chenopodium quinoa HOM05D007490 ORTHO05D008750 2.5e-16 90.1 64 70.3
Thhalv10006439m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 3.2e-16 89.7 245 31.4
CARHR167640 Cardamine hirsuta HOM05D007490 ORTHO05D008750 4.2e-16 89.4 244 32.8
arahy.Tifrunner.gnm1.ann1.M65R33 Arachis hypogaea HOM05D007490 ORTHO05D008750 5.5e-16 89.0 69 65.2
arahy.Tifrunner.gnm1.ann1.QGQ977 Arachis hypogaea HOM05D007490 ORTHO05D008750 5.5e-16 89.0 69 65.2
unitig_0.g2659 Utricularia gibba HOM05D007490 ORTHO05D008750 7.1e-16 88.6 160 45.0
Aqoxy3G01571 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 1.2e-15 87.8 72 59.7
Aqoxy5G00272 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 1.2e-15 87.8 70 60.0
AL5G39010 Arabidopsis lyrata HOM05D007490 ORTHO05D008750 1.6e-15 87.4 245 31.8
A09p50330 Brassica napus HOM05D007490 ORTHO05D008750 2.1e-15 87.0 143 39.2
AT3G57440 Arabidopsis thaliana HOM05D007490 ORTHO05D008750 3.5e-15 86.3 245 32.2
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 3.5e-15 86.3 242 34.3
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 4.6e-15 85.9 71 63.4
MD14G1067100 Malus domestica HOM05D007490 ORTHO05D008750 4.6e-15 85.9 76 57.9
SHI15744 Sapria himalayana HOM05D007490 ORTHO05D008750 7.9e-15 85.1 72 59.7
Sabra06G0035600 Salix brachista HOM05D007490 ORTHO05D008750 1.0e-14 84.7 243 37.0
Carub.0005s2428 Capsella rubella HOM05D007490 ORTHO05D008750 1.3e-14 84.3 245 31.8
Haze_19861 Corylus avellana HOM05D007490 ORTHO05D008750 1.3e-14 84.3 160 40.6
Ah.04g151770 Amaranthus hybridus HOM05D007490 ORTHO05D008750 2.3e-14 83.6 66 69.7
BcaC07g40379 Brassica carinata HOM05D007490 ORTHO05D008750 3.0e-14 83.2 146 39.0
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 3.0e-14 83.2 201 32.8
Thhalv10017790m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 3.9e-14 82.8 73 57.5
Sp5g05160 Schrenkiella parvula HOM05D007490 ORTHO05D008750 6.7e-14 82.0 72 59.7
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 1.1e-13 81.3 172 37.8
BcaC07g40383 Brassica carinata HOM05D007490 ORTHO05D008750 1.9e-13 80.5 71 57.7
Migut.K00089 Erythranthe guttata HOM05D007490 ORTHO05D008750 1.9e-13 80.5 238 39.9
ECA236G0950 Erigeron canadensis HOM05D007490 ORTHO05D008750 2.5e-13 80.1 249 38.2
Actinidia39227 Actinidia chinensis HOM05D007490 ORTHO05D008750 4.3e-13 79.3 169 44.4
SGA_v2.0_scaffold273G46437 Striga asiatica HOM05D007490 ORTHO05D008750 4.3e-13 79.3 210 33.3
A03p23430 Brassica napus HOM05D007490 ORTHO05D008750 5.7e-13 79.0 73 56.2
BraA03t11560Z Brassica rapa HOM05D007490 ORTHO05D008750 5.7e-13 79.0 73 56.2
SalBow3G0554 Salvia bowleyana HOM05D007490 ORTHO05D008750 5.7e-13 79.0 243 31.3
PSO339G3404 Papaver somniferum HOM05D007490 ORTHO05D008750 2.2e-12 77.0 65 61.5
BcaNung06245 Brassica carinata HOM05D007490 ORTHO05D008750 2.8e-12 76.6 73 53.4
C03p27950 Brassica napus HOM05D007490 ORTHO05D008750 3.7e-12 76.3 73 52.1
BolC3t15167H Brassica oleracea HOM05D007490 ORTHO05D008750 3.7e-12 76.3 73 52.1
SGA_v2.0_scaffold94G28485 Striga asiatica HOM05D007490 ORTHO05D008750 4.1e-11 72.8 208 32.7
Actinidia09331 Actinidia chinensis HOM05D007490 ORTHO05D008750 9.0e-11 71.6 169 37.3
Cpa.g.sc92.48 Carica papaya HOM05D007490 ORTHO05D008750 9.0e-11 71.6 218 34.4
PSO384G3220 Papaver somniferum HOM05D007490 ORTHO05D008750 5.9e-10 68.9 61 60.7
Phvul.007G252900 Phaseolus vulgaris HOM05D007490 ORTHO05D008750 1.3e-09 67.8 229 32.3
VMungo0720G0884 Vigna mungo HOM05D007490 ORTHO05D008750 5.0e-09 65.9 225 31.6
AagrBONN_evm.TU.Sc2ySwM_228.5650 Anthoceros agrestis HOM05D017655 ORTHO05D008750 8.5e-09 65.1 69 47.8
SEGI_14290 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 1.4e-08 64.3 89 41.6
SEGI_34104 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 1.4e-08 64.3 89 41.6
SEGI_24459 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 1.9e-08 63.9 80 45.0
SEGI_37898 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 3.2e-08 63.2 72 45.8
Lj5g0014197 Lotus japonicus HOM05D007490 ORTHO05D008750 5.5e-08 62.4 232 33.2
THA.LOC104804865 Tarenaya hassleriana HOM05D007490 ORTHO05D008750 7.2e-08 62.0 62 53.2
Lalb_Chr21g0316471 Lupinus albus HOM05D007490 ORTHO05D008750 2.7e-07 60.1 47 74.5
TPR.G10631 Trifolium pratense HOM05D007490 ORTHO05D008750 2.7e-07 60.1 229 30.1
Ca_26016_v3 Cicer arietinum L. HOM05D007490 ORTHO05D008750 7.9e-07 58.5 154 30.5
Duzib205G1398 Durio zibethinus HOM05D007490 ORTHO05D008750 7.9e-07 58.5 160 31.2
Psat6g119920 Pisum sativum HOM05D007490 ORTHO05D008750 1.8e-06 57.4 233 31.3
Oeu033005.1 Olea europaea HOM05D007490 ORTHO05D008750 2.3e-06 57.0 127 35.4
PGSC0003DMG400023724 Solanum tuberosum HOM05D015445 ORTHO05D008750 3.9e-06 56.2 156 33.3
Solyc10g080140.2 Solanum lycopersicum HOM05D015445 ORTHO05D008750 5.1e-06 55.8 151 33.1


User provided reference genes

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