Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-73 278.5 151 100.0
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 5.4e-62 241.1 125 97.6
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.1e-57 226.9 123 92.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.1e-57 225.3 123 91.9
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 9.0e-57 223.8 122 91.8
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.6e-56 220.7 123 91.1
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-55 218.4 150 80.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.9e-51 206.1 146 77.4
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.8e-50 202.2 122 80.3
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 3.7e-50 201.8 146 76.0
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.5e-48 194.9 146 67.1
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 5.8e-48 194.5 146 66.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 5.8e-48 194.5 146 67.1
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.2e-47 192.6 146 67.1
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.9e-47 192.2 146 65.8
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.9e-47 192.2 146 65.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.9e-47 192.2 146 65.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 8.4e-47 190.7 146 67.1
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-46 190.3 146 65.1
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-46 190.3 146 66.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.2e-46 188.7 144 70.8
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.1e-46 187.6 146 66.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.3e-46 187.2 146 66.4
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 9.3e-46 187.2 146 66.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-45 186.8 146 71.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-45 186.4 146 65.1
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.6e-45 186.4 146 65.8
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.6e-45 186.4 146 65.1
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.1e-45 186.0 146 65.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.0e-44 183.7 147 63.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.8e-44 183.0 146 63.7
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.8e-44 183.0 146 69.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.9e-44 181.8 146 65.8
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.9e-44 181.8 144 63.9
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 3.9e-44 181.8 146 69.9
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 6.7e-44 181.0 146 61.6
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 6.7e-44 181.0 146 63.7
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.1e-43 180.3 146 68.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.5e-43 179.9 147 66.0
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.7e-43 177.9 146 67.8
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.7e-43 177.9 146 67.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.4e-43 177.6 147 62.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 4.8e-42 174.9 122 72.1
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 8.2e-42 174.1 146 58.2
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 8.2e-42 174.1 146 67.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 8.2e-42 174.1 126 73.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.4e-41 173.3 146 61.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.1e-41 171.8 122 70.5
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 9.0e-41 170.6 146 63.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.2e-40 170.2 122 69.7
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.2e-40 170.2 149 60.4
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.6e-40 169.1 149 66.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 4.5e-40 168.3 123 65.9
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 5.9e-40 167.9 148 60.1
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.9e-40 167.9 149 59.7
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 7.6e-40 167.5 146 61.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 7.6e-40 167.5 122 68.0
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 7.6e-40 167.5 145 60.0
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-39 167.2 146 60.3
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.0e-39 167.2 125 66.4
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.7e-39 166.4 147 60.5
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.9e-39 165.6 153 64.1
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.8e-39 165.2 124 62.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 5.0e-39 164.9 146 58.9
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 8.5e-39 164.1 124 63.7
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 8.5e-39 164.1 146 62.3
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.4e-38 163.3 142 60.6
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.4e-38 163.3 147 63.3
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.2e-38 162.2 120 68.3
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.2e-38 161.8 121 67.8
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.2e-38 161.8 121 67.8
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.2e-38 161.0 146 58.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 2.1e-37 159.5 122 68.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.1e-37 159.5 146 57.5
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.6e-37 158.7 146 54.8
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.0e-36 157.1 120 65.8
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.3e-36 156.0 122 59.8
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.5e-35 153.3 146 57.5
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-35 152.9 125 56.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 3.3e-35 152.1 124 58.1
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 4.3e-35 151.8 150 62.7
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.7e-35 151.4 135 59.3
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 9.7e-35 150.6 147 52.4
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-34 149.8 122 56.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.6e-34 149.8 122 60.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.6e-34 149.8 146 56.8
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.8e-34 149.1 122 55.7
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.7e-34 148.7 122 59.8
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 6.3e-34 147.9 124 58.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 6.3e-34 147.9 147 53.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 8.2e-34 147.5 147 59.9
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-33 147.1 122 54.9
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.4e-33 146.7 121 60.3
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.4e-33 146.0 120 63.3
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.1e-33 145.6 146 54.8
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.1e-33 145.6 146 54.8
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 4.1e-33 145.2 123 58.5
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 5.3e-33 144.8 146 50.7
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 6.9e-33 144.4 146 52.7
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 9.1e-33 144.1 122 57.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 9.1e-33 144.1 146 52.7
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.2e-32 143.7 146 52.1
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-32 143.7 139 51.8
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-32 143.7 139 51.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.4e-32 142.1 146 52.1
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.4e-32 142.1 146 56.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.2e-31 139.4 150 50.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.8e-31 138.7 125 56.0
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 6.5e-31 137.9 147 53.1
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-30 136.7 147 49.7
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 7.2e-30 134.4 146 57.5
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 9.4e-30 134.0 146 52.1
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.2e-29 133.7 146 52.1
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.1e-29 132.9 122 55.7
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.7e-29 132.5 122 53.3
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 2.7e-29 132.5 147 49.7
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.6e-29 132.1 121 53.7
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 6.1e-29 131.3 122 55.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.1e-29 131.3 122 55.7
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 7.9e-29 131.0 153 51.6
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.4e-28 130.2 146 54.1
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.4e-28 130.2 146 54.1
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.4e-28 130.2 118 59.3
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-28 129.8 122 54.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.8e-28 129.8 122 54.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.8e-28 129.8 143 47.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.8e-28 129.8 122 55.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.8e-28 129.8 146 48.6
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 3.0e-28 129.0 121 52.1
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 5.7e-27 124.8 120 52.5
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.8e-25 119.8 146 51.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 3.1e-25 119.0 125 52.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 4.5e-24 115.2 146 44.5
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.0e-23 114.0 90 63.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-23 114.0 63 92.1
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.9e-23 112.5 116 54.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 3.8e-23 112.1 59 89.8
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 5.0e-23 111.7 85 64.7
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 5.0e-23 111.7 80 68.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 7.9e-21 104.4 118 50.8
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 7.9e-21 104.4 125 45.6
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.0e-20 104.0 75 65.3
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.4e-20 103.6 145 43.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.3e-20 102.8 128 45.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 5.7e-19 98.2 125 42.4
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.4e-19 97.8 149 40.3
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 3.7e-18 95.5 125 41.6
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 3.7e-18 95.5 125 41.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.1e-17 92.4 146 38.4
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.1e-17 92.0 146 38.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 9.1e-17 90.9 147 39.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 9.1e-17 90.9 97 49.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.5e-16 89.0 142 41.5
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.0e-15 87.4 84 56.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.7e-15 86.7 71 59.2
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.5e-15 84.3 62 69.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.9e-14 83.2 92 48.9
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 9.4e-14 80.9 124 41.9
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 5.9e-08 61.6 85 43.5
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.3e-07 60.5 54 57.4
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.2e-07 59.7 54 57.4
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 2.9e-07 59.3 89 39.3
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 6.5e-07 58.2 52 51.9
SMO174G0209 Selaginella moellendorffii HOM05D019185 ORTHO05D031160 9.4e-06 54.3 85 35.3


User provided reference genes

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