Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.7e-115 419.9 294 100.0
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.2e-86 321.6 294 81.3
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-85 320.1 294 81.3
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.0e-84 316.6 294 81.0
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.1e-82 308.1 294 78.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 9.2e-82 307.8 294 79.9
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.2e-82 307.8 294 79.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 7.1e-66 255.0 300 76.3
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.9e-56 222.6 303 67.7
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.9e-55 220.3 295 66.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.9e-55 220.3 295 68.1
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.1e-53 214.5 295 68.1
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.9e-51 205.7 297 68.4
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 6.4e-51 205.3 294 68.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 8.4e-51 204.9 292 69.5
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.3e-48 197.6 300 64.3
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.5e-47 194.1 298 69.8
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 1.9e-47 193.7 294 63.3
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.5e-47 193.4 295 67.1
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.6e-47 191.4 296 65.5
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.8e-45 187.2 302 62.9
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.9e-45 185.3 296 64.5
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.2e-44 184.5 296 66.2
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.6e-44 183.3 297 62.3
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.0e-43 181.4 300 64.0
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.3e-43 181.0 293 62.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.7e-43 180.6 299 61.9
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.2e-43 180.3 292 65.4
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-42 177.9 311 62.4
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.9e-42 177.2 273 66.7
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 5.5e-42 175.6 300 54.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 9.3e-42 174.9 274 61.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.3e-42 174.9 273 67.0
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 9.3e-42 174.9 291 62.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.2e-41 174.5 310 61.9
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.2e-41 174.5 285 52.6
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.7e-41 173.3 319 42.0
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 4.6e-41 172.6 306 62.7
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 6.0e-41 172.2 309 60.2
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.8e-40 170.6 293 64.5
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.8e-40 170.6 287 65.2
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 3.0e-40 169.9 308 60.4
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.0e-40 169.9 303 61.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.9e-40 169.5 289 60.9
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.1e-40 169.1 212 53.3
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 6.7e-40 168.7 296 48.0
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 6.7e-40 168.7 314 58.6
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 8.7e-40 168.3 298 61.7
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 8.7e-40 168.3 211 54.0
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 8.7e-40 168.3 298 61.7
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.5e-39 167.5 294 62.2
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.9e-39 167.2 219 53.4
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.9e-39 167.2 295 63.1
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.9e-39 167.2 305 62.0
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 3.3e-39 166.4 272 66.9
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.1e-38 163.7 302 58.6
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.8e-38 163.3 278 62.2
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.8e-38 162.5 286 61.5
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 6.3e-38 162.2 275 64.0
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 6.3e-38 162.2 275 64.0
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 8.2e-38 161.8 320 58.1
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.1e-37 161.4 203 52.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-37 161.4 258 65.1
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-37 161.4 296 60.1
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.4e-37 161.0 280 65.4
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.4e-37 161.0 289 62.3
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.4e-37 160.2 274 63.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.1e-37 159.8 291 62.9
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.3e-37 159.1 286 61.2
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 6.9e-37 158.7 298 60.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 3.4e-36 156.4 302 59.3
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.7e-35 154.1 276 63.8
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.7e-35 154.1 275 62.2
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 6.5e-35 152.1 216 50.0
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 6.5e-35 152.1 306 59.8
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.5e-35 152.1 215 51.2
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.5e-35 152.1 310 57.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.5e-35 152.1 295 60.3
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 8.5e-35 151.8 301 58.8
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 2.5e-34 150.2 324 57.4
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 2.5e-34 150.2 274 66.4
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.2e-34 149.8 304 57.9
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 3.2e-34 149.8 300 59.3
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 5.5e-34 149.1 280 62.5
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.2e-33 147.9 276 63.0
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.2e-33 147.9 299 59.5
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-33 147.5 287 61.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.7e-33 146.7 284 58.8
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 3.6e-33 146.4 300 57.3
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.8e-32 144.1 287 61.3
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.3e-32 143.7 196 53.1
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.9e-32 142.9 273 61.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 8.7e-32 141.7 291 57.7
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.9e-31 140.6 294 57.1
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.9e-31 140.6 305 59.7
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 2.5e-31 140.2 302 57.3
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.4e-31 138.7 277 61.0
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.7e-31 138.3 310 54.8
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.8e-30 136.7 204 50.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 6.3e-30 135.6 309 59.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.1e-29 134.8 300 57.0
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.8e-29 134.0 294 47.3
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 5.3e-29 132.5 293 55.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.1e-29 131.7 233 65.7
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.6e-28 130.2 207 46.9
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.6e-28 130.2 218 49.1
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.9e-28 129.0 188 49.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 2.2e-27 127.1 252 64.3
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 8.5e-27 125.2 288 53.5
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 8.5e-27 125.2 200 50.5
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-26 124.8 222 46.4
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.4e-26 124.4 278 57.9
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 9.4e-26 121.7 320 55.6
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 6.1e-25 119.0 295 53.6
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.0e-24 118.2 179 49.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.3e-24 117.1 273 35.9
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.3e-24 117.1 290 52.8
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.0e-24 116.7 284 53.9
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.3e-23 113.2 284 45.4
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 9.7e-23 111.7 306 50.0
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 9.7e-23 111.7 286 54.5
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 8.2e-22 108.6 275 55.6
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.4e-21 107.8 297 52.2
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.4e-21 107.8 290 49.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.8e-21 107.5 297 52.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.4e-21 107.1 304 50.7
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.1e-21 106.3 297 50.2
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.2e-20 104.8 282 53.9
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 3.4e-20 103.2 290 49.3
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 3.4e-20 103.2 304 52.3
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 4.5e-20 102.8 290 49.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.5e-20 102.8 297 50.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.5e-20 102.8 328 37.2
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 5.9e-20 102.4 286 50.7
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 5.9e-20 102.4 290 42.1
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 5.9e-20 102.4 290 42.1
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-19 101.3 173 73.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.7e-19 100.9 285 53.0
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.2e-19 100.5 298 43.3
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.8e-19 99.8 141 53.2
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 8.5e-19 98.6 281 51.2
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 8.5e-19 98.6 297 49.8
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 8.5e-19 98.6 297 49.8
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 8.5e-19 98.6 297 49.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.1e-18 98.2 296 51.4
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.1e-18 98.2 217 37.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.9e-18 97.4 293 50.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 5.5e-18 95.9 297 49.2
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 9.4e-18 95.1 286 50.3
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 9.4e-18 95.1 303 37.6
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 9.4e-18 95.1 298 48.7
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 6.1e-17 92.4 301 49.5
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.8e-16 90.9 307 52.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 3.0e-16 90.1 137 49.6
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.0e-16 90.1 206 41.3
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 4.4e-15 86.3 302 37.7
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-14 84.7 290 47.2
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-14 84.7 264 34.8
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.7e-14 83.2 284 49.3
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 4.8e-14 82.8 130 50.8
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.8e-13 80.9 231 41.6
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.2e-10 68.9 75 60.0
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.2e-10 68.9 89 50.6
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.4e-08 64.7 38 81.6
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.8e-08 64.3 292 43.5
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 2.0e-07 60.8 117 79.5
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.0e-07 60.8 66 54.5
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 6.3e-06 55.8 69 60.9


User provided reference genes

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