Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 9.3e-77 290.0 138 100.0
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 3.4e-71 271.6 137 94.2
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 1.1e-69 266.5 137 93.4
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 7.9e-68 260.4 137 92.0
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 6.7e-67 257.3 129 94.6
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 8.2e-65 250.4 138 86.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.2e-65 250.4 138 86.2
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.2e-65 250.4 138 86.2
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-64 250.0 138 86.2
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-64 250.0 138 86.2
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.4e-61 239.6 137 81.8
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 7.2e-61 237.3 136 82.4
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 2.3e-59 232.3 137 77.4
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 2.5e-53 212.2 137 72.3
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.2e-52 209.9 137 72.3
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 6.1e-52 207.6 137 69.3
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.0e-51 206.8 135 71.9
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.8e-51 206.1 133 72.2
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 2.3e-51 205.7 137 67.2
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 2.3e-51 205.7 135 70.4
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 3.0e-51 205.3 133 71.4
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 5.2e-51 204.5 137 66.4
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 6.7e-51 204.1 137 68.6
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 1.5e-50 203.0 137 67.2
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.0e-50 202.6 135 68.9
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-50 201.8 103 93.2
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 4.4e-50 201.4 137 66.4
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 4.4e-50 201.4 137 67.9
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 5.7e-50 201.1 137 67.2
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 1.3e-49 199.9 137 65.0
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 3.7e-49 198.4 137 67.2
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 3.7e-49 198.4 137 67.2
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 3.7e-49 198.4 137 67.2
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 6.3e-49 197.6 137 66.4
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.1e-48 196.8 137 66.4
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 1.4e-48 196.4 135 67.4
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 1.8e-48 196.1 135 65.2
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 3.1e-48 195.3 137 65.0
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 4.1e-48 194.9 135 65.9
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 5.3e-48 194.5 135 65.9
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 7.7e-47 190.7 137 61.3
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.7e-46 189.5 135 69.6
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 5.0e-46 188.0 137 65.0
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 6.5e-46 187.6 103 88.3
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.1e-45 186.8 137 62.0
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.9e-45 186.0 137 64.2
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.9e-45 186.0 137 64.2
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.5e-45 184.5 137 62.8
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 5.5e-45 184.5 137 64.2
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 7.2e-45 184.1 137 62.8
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 1.4e-43 179.9 137 59.9
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.4e-43 179.9 139 61.2
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.0e-43 178.7 137 60.6
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 3.0e-43 178.7 122 68.0
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 5.2e-43 177.9 137 62.0
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 6.8e-43 177.6 137 59.9
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 8.8e-43 177.2 135 60.7
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 1.2e-42 176.8 133 63.2
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 2.0e-42 176.0 135 60.7
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 3.4e-42 175.3 135 60.7
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 7.5e-42 174.1 135 60.7
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.3e-41 173.3 139 61.2
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.7e-41 172.9 139 60.4
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.7e-41 172.9 137 59.9
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.2e-41 172.6 131 64.9
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 4.8e-41 171.4 137 60.6
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 4.8e-41 171.4 135 60.0
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 8.3e-41 170.6 153 56.2
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.4e-40 169.9 132 62.9
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 3.1e-40 168.7 135 57.0
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 5.4e-40 167.9 131 61.1
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 7.0e-40 167.5 140 55.7
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 7.0e-40 167.5 131 61.1
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 9.1e-40 167.2 131 61.1
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.2e-39 166.8 131 59.5
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.6e-39 166.4 135 60.0
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 1.6e-39 166.4 131 62.6
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 2.7e-39 165.6 133 60.2
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 2.7e-39 165.6 133 60.2
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 4.5e-39 164.9 140 55.0
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 5.9e-39 164.5 140 55.0
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 5.9e-39 164.5 140 56.4
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 7.7e-39 164.1 140 55.0
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.0e-38 163.7 140 55.0
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.0e-38 163.7 137 57.7
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.3e-38 163.3 141 56.0
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-38 162.9 140 54.3
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 1.7e-38 162.9 140 54.3
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 1.7e-38 162.9 140 55.0
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 2.2e-38 162.5 140 54.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 2.2e-38 162.5 140 54.3
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 2.2e-38 162.5 140 54.3
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 2.2e-38 162.5 140 54.3
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 2.9e-38 162.2 141 55.3
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 2.9e-38 162.2 141 55.3
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 2.9e-38 162.2 141 55.3
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 5.0e-38 161.4 141 55.3
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 6.5e-38 161.0 131 57.3
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 8.5e-38 160.6 140 53.6
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.3e-35 152.5 137 54.7
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 5.7e-34 147.9 117 61.5
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 1.7e-33 146.4 103 72.8
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.5e-31 138.7 111 59.5
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 3.5e-31 138.7 95 63.2
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.8e-28 129.0 133 49.6
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.8e-28 129.0 133 49.6
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 3.0e-27 125.6 98 61.2
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 3.4e-26 122.1 103 59.2
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 9.8e-26 120.6 111 53.2
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 5.9e-23 111.3 118 55.1
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.0e-22 110.5 137 43.8
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 1.7e-22 109.8 85 61.2
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 4.3e-21 105.1 131 40.5
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 2.3e-19 99.4 112 50.0
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 2.3e-19 99.4 112 50.0
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 2.3e-19 99.4 112 50.0
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 2.3e-19 99.4 112 50.0
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 2.3e-19 99.4 112 50.0
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 4.3e-13 78.6 117 40.2
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 1.6e-12 76.6 55 58.2
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 2.1e-12 76.3 51 62.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 3.6e-12 75.5 52 61.5
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 4.7e-12 75.1 51 60.8
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 4.7e-12 75.1 51 60.8
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 8.1e-12 74.3 51 60.8
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.9e-08 63.2 69 46.4
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 4.1e-08 62.0 47 59.6
FAN23G0919 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.1e-08 62.0 37 81.1
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 5.1e-06 55.1 36 58.3


User provided reference genes

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