Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 4.9e-257 890.6 437 100.0
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 3.3e-245 851.3 438 95.0
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 4.5e-242 840.9 448 92.6
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.8e-236 821.6 438 92.9
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.2e-232 807.0 464 87.3
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.7e-230 800.4 448 89.1
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 7.2e-224 780.4 437 85.6
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 3.1e-219 765.0 437 83.1
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 7.7e-218 760.4 437 83.1
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 3.2e-216 755.0 436 82.8
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.7e-212 742.7 437 81.0
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.0e-210 735.7 436 80.5
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.0e-210 735.7 437 80.8
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 4.5e-210 734.6 437 80.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.5e-210 734.6 436 80.0
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 7.7e-210 733.8 435 80.9
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.7e-209 732.6 437 79.6
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.3e-209 732.3 437 80.1
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 3.8e-209 731.5 437 79.9
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 8.6e-209 730.3 437 79.2
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 5.5e-208 727.6 438 79.7
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 5.5e-208 727.6 437 78.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 5.5e-208 727.6 437 78.5
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 7.2e-208 727.2 437 79.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 9.5e-208 726.9 437 79.6
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 3.6e-207 724.9 436 78.9
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 4.7e-207 724.5 436 80.3
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.0e-206 721.5 436 78.7
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.2e-206 721.1 437 78.9
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.5e-205 719.5 439 78.1
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.6e-205 718.8 437 78.3
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.4e-205 718.4 438 77.6
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 3.4e-205 718.4 427 79.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.3e-204 716.5 437 77.6
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 3.7e-204 714.9 437 76.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.9e-204 714.5 438 77.2
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 6.3e-204 714.1 436 77.8
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.4e-203 713.0 437 79.2
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.6e-202 709.5 437 77.3
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.6e-202 709.5 437 77.8
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 2.0e-202 709.1 438 77.4
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 2.0e-202 709.1 436 77.1
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 5.9e-202 707.6 439 77.0
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 5.9e-202 707.6 436 76.6
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 5.9e-202 707.6 427 78.5
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 7.8e-202 707.2 437 78.0
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 7.8e-202 707.2 427 78.0
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.3e-201 706.4 436 75.0
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.3e-201 705.7 438 76.9
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.9e-201 705.3 440 77.0
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 3.8e-201 704.9 429 78.1
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 3.8e-201 704.9 436 76.4
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 5.0e-201 704.5 439 76.8
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 5.0e-201 704.5 439 76.8
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 6.6e-201 704.1 427 77.3
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.5e-200 703.0 436 76.6
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 2.5e-200 702.2 454 74.0
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 1.2e-199 699.9 439 76.3
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 4.7e-199 698.0 440 76.4
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 4.7e-199 698.0 425 78.4
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 8.0e-199 697.2 437 75.7
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.2e-197 693.3 443 74.9
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 2.0e-197 692.6 439 74.3
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 2.0e-197 692.6 420 78.8
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 2.6e-197 692.2 436 75.7
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.3e-196 689.9 436 75.0
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.3e-196 689.9 437 73.7
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.2e-196 689.1 437 76.0
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 2.9e-196 688.7 421 79.3
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 4.1e-195 684.9 436 75.7
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 5.4e-195 684.5 427 75.6
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.2e-194 683.3 393 81.9
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 7.8e-194 680.6 421 77.9
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.0e-193 680.2 427 76.6
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 3.9e-193 678.3 427 75.9
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 5.0e-193 677.9 437 74.1
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.6e-191 672.9 435 74.5
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 8.0e-191 670.6 442 74.9
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.3e-190 669.1 415 75.9
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 6.8e-190 667.5 435 74.0
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 3.4e-189 665.2 423 74.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 7.5e-189 664.1 427 73.8
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 4.1e-187 658.3 417 74.3
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 4.1e-187 658.3 415 74.9
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.0e-185 653.7 451 71.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.5e-181 639.8 427 70.0
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.3e-180 636.7 421 74.6
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 4.9e-180 634.8 467 67.9
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.5e-178 628.6 397 76.1
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 3.9e-177 625.2 431 68.4
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 9.5e-176 620.5 492 63.8
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.6e-173 612.5 429 67.1
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.2e-171 605.1 438 64.8
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 3.0e-169 599.0 445 66.1
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.5e-165 586.6 474 60.8
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 5.4e-163 578.2 480 61.9
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 7.1e-163 577.8 540 56.3
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 1.2e-162 577.0 359 79.4
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.7e-162 575.9 421 68.2
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.3e-161 573.5 393 70.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 3.3e-160 568.9 363 75.8
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.2e-157 560.5 375 70.7
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 2.6e-157 559.3 436 64.0
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.8e-151 539.3 437 62.7
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 9.0e-150 534.3 427 59.5
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 3.2e-147 525.8 463 56.6
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 3.2e-147 525.8 438 58.7
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.5e-146 522.3 464 59.3
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.3e-143 513.8 421 62.5
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.4e-142 509.6 435 55.9
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 3.1e-134 482.6 442 53.6
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.5e-131 473.0 421 53.9
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.0e-124 451.1 409 54.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.6e-122 443.7 268 76.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 8.2e-111 404.8 246 75.6
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.0e-105 386.3 244 77.9
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 6.8e-97 358.6 385 45.5
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 2.0e-93 347.1 243 73.3
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 3.8e-92 342.8 285 60.0
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 5.0e-92 342.4 194 80.4
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.9e-91 340.5 195 79.5
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 4.7e-90 335.9 449 40.5
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.5e-88 330.9 507 36.9
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.3e-63 248.1 157 76.4
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.6e-58 231.1 210 57.1
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.2e-54 216.5 169 60.4
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.7e-47 194.5 242 46.3
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 5.4e-46 189.5 422 32.0
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 1.0e-44 185.3 184 52.2
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 7.3e-43 179.1 141 61.7
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.4e-41 174.9 91 83.5
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 2.6e-40 170.6 108 67.6
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 3.4e-40 170.2 195 48.7
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 7.6e-40 169.1 152 56.6
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.7e-34 150.2 132 52.3
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 1.2e-32 145.2 142 53.5
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.5e-30 137.5 125 56.8
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 5.5e-30 136.3 96 63.5
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 6.0e-29 132.9 86 66.3
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 7.4e-27 125.9 105 59.0
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.1e-26 124.4 126 51.6
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 3.2e-22 110.5 126 48.4
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 7.2e-22 109.4 96 53.1
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 2.8e-18 97.4 67 74.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 1.5e-16 91.7 66 62.1
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 7.2e-14 82.8 63 71.4
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 6.1e-13 79.7 71 56.3
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.3e-10 72.0 188 30.3
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 3.1e-09 67.4 53 64.2
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 3.1e-09 67.4 53 64.2
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 3.1e-09 67.4 53 64.2
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 4.1e-09 67.0 82 46.3
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 2.5e-06 57.8 47 57.4
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.2e-06 57.4 40 65.0


User provided reference genes

Program Settings