Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.3e-71 273.1 155 100.0
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.7e-64 248.8 157 87.9
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 3.5e-64 248.4 157 87.9
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.0e-63 246.9 157 87.3
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 5.1e-63 244.6 157 86.6
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.5e-62 242.3 155 85.2
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 2.9e-42 175.6 158 67.1
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 4.2e-41 171.8 162 69.8
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 5.1e-39 164.9 143 69.9
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 5.4e-33 144.8 140 64.3
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 5.6e-30 134.8 145 55.9
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 1.4e-28 130.2 138 58.7
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 3.1e-28 129.0 138 60.9
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 3.1e-28 129.0 138 56.5
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 3.1e-28 129.0 136 55.9
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 5.3e-28 128.3 140 57.9
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 3.4e-27 125.6 140 58.6
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 3.4e-27 125.6 144 54.2
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 5.8e-27 124.8 143 57.3
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.7e-26 123.2 138 55.8
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 2.9e-26 122.5 140 50.7
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 2.9e-26 122.5 147 54.4
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 2.9e-26 122.5 139 56.8
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 3.8e-26 122.1 143 53.1
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 3.8e-26 122.1 136 59.6
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 4.9e-26 121.7 141 55.3
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 4.9e-26 121.7 135 58.5
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 8.4e-26 120.9 140 57.1
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 1.9e-25 119.8 136 52.9
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 2.5e-25 119.4 147 53.7
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 2.5e-25 119.4 147 53.7
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 5.5e-25 118.2 147 53.7
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 2.7e-24 115.9 136 51.5
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 3.5e-24 115.5 135 56.3
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 6.0e-24 114.8 138 52.2
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 7.9e-24 114.4 136 52.9
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 1.3e-23 113.6 135 56.3
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 1.3e-23 113.6 146 54.1
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 1.8e-23 113.2 136 55.1
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 5.1e-23 111.7 161 46.6
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 5.1e-23 111.7 136 54.4
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 6.7e-23 111.3 147 52.4
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 2.5e-22 109.4 161 46.0
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 9.6e-22 107.5 139 48.2
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 9.6e-22 107.5 139 48.2
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 9.6e-22 107.5 139 48.2
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 9.6e-22 107.5 139 48.2
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 9.6e-22 107.5 136 53.7
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 1.3e-21 107.1 151 49.7
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 1.6e-21 106.7 157 45.9
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 2.1e-21 106.3 136 49.3
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 2.1e-21 106.3 155 47.7
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 2.1e-21 106.3 136 51.5
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 3.7e-21 105.5 140 48.6
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 3.7e-21 105.5 135 48.9
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 3.7e-21 105.5 135 48.9
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 4.8e-21 105.1 145 46.9
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 4.8e-21 105.1 136 52.2
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 6.2e-21 104.8 139 50.4
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 8.2e-21 104.4 132 48.5
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 8.2e-21 104.4 132 48.5
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 1.8e-20 103.2 151 47.7
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 2.4e-20 102.8 135 47.4
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 4.0e-20 102.1 138 47.8
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 5.3e-20 101.7 139 48.2
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 6.9e-20 101.3 132 47.7
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 1.5e-19 100.1 138 49.3
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 1.5e-19 100.1 144 49.3
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 1.5e-19 100.1 136 50.0
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 2.0e-19 99.8 135 48.9
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 2.0e-19 99.8 139 45.3
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 2.0e-19 99.8 137 46.7
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 2.6e-19 99.4 139 47.5
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 3.4e-19 99.0 136 47.1
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 3.4e-19 99.0 136 47.1
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 5.8e-19 98.2 135 47.4
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 5.8e-19 98.2 143 46.9
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 7.6e-19 97.8 137 45.3
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 7.6e-19 97.8 134 49.3
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 2.9e-18 95.9 158 43.7
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 2.9e-18 95.9 139 44.6
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 6.5e-18 94.7 136 46.3
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 1.1e-17 94.0 135 48.1
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 1.4e-17 93.6 142 45.8
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 1.9e-17 93.2 159 42.8
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 4.2e-17 92.0 134 47.0
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 5.5e-17 91.7 109 56.9
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 2.1e-16 89.7 142 44.4
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 3.5e-16 89.0 142 44.4
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 4.6e-16 88.6 135 44.4
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 1.5e-14 83.6 153 40.5
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 1.5e-14 83.6 132 44.7
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 5.7e-14 81.6 143 40.6
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 7.4e-14 81.3 125 43.2
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 9.7e-14 80.9 136 40.4
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 3.1e-12 75.9 139 41.0
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 3.4e-11 72.4 186 37.1
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 3.4e-11 72.4 153 37.9
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 4.5e-11 72.0 136 42.6
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 5.9e-11 71.6 132 47.7
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 1.1e-09 67.4 100 43.0
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 6.1e-08 61.6 163 32.5
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 1.8e-07 60.1 98 41.8
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 3.0e-07 59.3 135 37.0
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 8.8e-07 57.8 31 77.4
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 4.3e-06 55.5 91 37.4
Os03g0128300 Oryza sativa ssp. japonica HOM05D007306 ORTHO05D009112 4.3e-06 55.5 151 32.5
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 5.7e-06 55.1 136 33.1
unitig_22.g6026 Utricularia gibba HOM05D007306 ORTHO05D009112 7.4e-06 54.7 131 33.6


User provided reference genes

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