Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479581 Rosa chinensis HOM05D003466 ORTHO05D004102 3.0e-154 548.9 370 100.0
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 1.1e-58 231.5 415 51.1
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.8e-58 228.8 423 48.9
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 1.2e-57 228.0 417 51.8
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 2.0e-57 227.3 417 51.8
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 9.9e-57 224.9 423 50.1
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 2.9e-56 223.4 421 53.0
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 3.8e-56 223.0 419 50.4
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 4.9e-56 222.6 423 49.9
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 4.9e-56 222.6 417 50.4
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.4e-55 221.1 420 50.7
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 2.4e-55 220.3 421 50.1
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 5.4e-55 219.2 412 50.2
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 7.1e-55 218.8 417 54.9
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 7.1e-55 218.8 422 50.5
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 7.1e-55 218.8 414 50.0
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.6e-54 217.6 422 49.3
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.6e-54 217.6 422 49.3
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 1.6e-54 217.6 417 49.9
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 2.1e-54 217.2 419 50.6
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 2.1e-54 217.2 418 49.8
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 2.7e-54 216.9 421 48.5
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 2.7e-54 216.9 422 49.5
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 6.0e-54 215.7 424 49.5
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 7.8e-54 215.3 425 52.2
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 1.3e-53 214.5 419 50.1
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 1.7e-53 214.2 415 45.1
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 3.0e-53 213.4 419 53.0
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.0e-53 213.4 420 48.1
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.0e-53 213.4 416 48.3
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 3.0e-53 213.4 421 49.9
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 3.0e-53 213.4 421 49.9
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 3.0e-53 213.4 421 49.9
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 3.9e-53 213.0 422 43.6
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 5.1e-53 212.6 420 46.2
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 5.1e-53 212.6 419 44.4
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 5.1e-53 212.6 419 49.4
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 6.6e-53 212.2 423 51.1
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 8.7e-53 211.8 418 49.0
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 8.7e-53 211.8 422 45.7
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.1e-52 211.5 409 49.4
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.1e-52 211.5 409 49.4
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 1.1e-52 211.5 419 54.9
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 1.1e-52 211.5 416 48.6
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 1.1e-52 211.5 425 47.8
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 1.1e-52 211.5 420 53.3
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 1.5e-52 211.1 422 51.2
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 1.5e-52 211.1 422 51.2
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 1.5e-52 211.1 414 42.8
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 1.5e-52 211.1 418 50.5
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 1.5e-52 211.1 416 48.1
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.9e-52 210.7 420 48.6
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.9e-52 210.7 420 46.4
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 1.9e-52 210.7 425 49.6
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.9e-52 210.7 420 46.7
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 3.3e-52 209.9 417 43.4
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 3.3e-52 209.9 422 46.4
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 4.3e-52 209.5 421 48.9
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 4.3e-52 209.5 417 42.4
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 4.3e-52 209.5 415 51.3
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 4.3e-52 209.5 420 47.6
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 4.3e-52 209.5 427 55.5
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 7.3e-52 208.8 423 52.7
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 7.3e-52 208.8 417 48.7
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 7.3e-52 208.8 419 53.7
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 9.6e-52 208.4 414 48.3
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 9.6e-52 208.4 420 48.6
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 9.6e-52 208.4 418 47.1
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.3e-51 208.0 423 52.5
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 1.6e-51 207.6 423 51.3
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 2.1e-51 207.2 426 53.5
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 2.1e-51 207.2 415 52.3
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 2.8e-51 206.8 417 50.4
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 4.8e-51 206.1 415 50.1
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 8.1e-51 205.3 422 52.1
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 8.1e-51 205.3 426 46.7
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 1.1e-50 204.9 423 48.2
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 1.1e-50 204.9 419 48.2
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 1.1e-50 204.9 422 51.9
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 1.1e-50 204.9 420 49.5
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 1.8e-50 204.1 418 48.1
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 1.8e-50 204.1 422 48.3
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 2.4e-50 203.8 415 48.4
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 3.1e-50 203.4 423 48.2
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 3.1e-50 203.4 423 48.2
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 3.1e-50 203.4 415 52.0
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 4.0e-50 203.0 412 42.7
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.0e-50 203.0 427 46.8
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 5.3e-50 202.6 420 46.7
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 5.3e-50 202.6 422 43.6
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 5.3e-50 202.6 422 51.2
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 9.0e-50 201.8 424 46.9
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 9.0e-50 201.8 417 41.7
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 1.2e-49 201.4 419 48.2
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.5e-49 201.1 411 47.2
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 1.5e-49 201.1 419 50.1
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 2.6e-49 200.3 432 47.5
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 2.6e-49 200.3 421 50.8
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 2.6e-49 200.3 413 53.3
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 3.4e-49 199.9 425 47.8
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 3.4e-49 199.9 412 47.8
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 3.4e-49 199.9 412 49.3
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 7.6e-49 198.7 425 50.8
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 9.9e-49 198.4 418 43.3
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 1.3e-48 198.0 426 49.8
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.7e-48 197.6 412 50.5
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 1.7e-48 197.6 417 46.5
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 1.7e-48 197.6 422 46.2
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 2.2e-48 197.2 412 49.5
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 6.4e-48 195.7 427 47.1
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 3.2e-47 193.4 411 46.5
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 9.3e-47 191.8 419 52.7
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 9.3e-47 191.8 419 52.7
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 1.6e-46 191.0 411 50.6
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 1.6e-46 191.0 257 48.2
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 3.5e-46 189.9 424 47.2
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 4.6e-46 189.5 384 52.6
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 6.0e-46 189.1 427 47.8
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 2.3e-45 187.2 416 47.4
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 5.1e-45 186.0 389 49.9
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 9.6e-44 181.8 429 48.5
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 1.6e-43 181.0 417 41.5
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.1e-43 180.6 438 44.3
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.8e-42 177.6 418 44.5
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.8e-42 177.6 418 44.5
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 5.3e-42 176.0 420 46.2
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 6.9e-42 175.6 419 47.3
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 1.2e-41 174.9 422 42.9
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 1.2e-41 174.9 389 47.8
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 5.8e-41 172.6 367 42.8
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 7.6e-41 172.2 382 41.4
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 1.3e-40 171.4 388 43.6
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 3.8e-40 169.9 139 61.9
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 4.9e-40 169.5 422 39.8
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 8.4e-40 168.7 406 35.5
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.2e-39 166.8 253 43.9
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 2.1e-38 164.1 415 41.9
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 6.7e-37 159.1 111 64.9
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 2.5e-36 157.1 421 43.7
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 3.3e-36 156.8 410 34.9
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 4.3e-36 156.4 390 46.4
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 5.6e-36 156.0 226 46.0
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 3.7e-35 153.3 420 34.3
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 3.7e-35 153.3 379 45.1
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 4.8e-35 152.9 420 34.0
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.4e-34 151.4 117 62.4
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.8e-34 151.0 439 36.7
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 6.9e-34 149.1 342 34.2
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 3.4e-33 146.7 386 32.4
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.5e-33 146.4 401 47.6
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.2e-32 144.1 354 39.3
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 3.8e-32 143.3 390 46.2
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 3.8e-32 143.3 403 41.2
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.5e-30 136.7 423 43.5
SMO236G0087 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 1.3e-29 134.8 122 54.9
SMO236G0065 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.3e-29 134.0 122 54.9
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 1.1e-28 131.7 335 41.2
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 1.3e-27 128.3 219 41.6
SMO192G0020 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.1e-27 127.5 128 50.0
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 3.4e-25 120.2 356 48.9
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 8.7e-21 105.5 361 46.5
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 7.4e-20 102.4 355 34.4
Prupe.2G026300 Prunus persica HOM05D003466 ORTHO05D004102 8.2e-19 99.0 78 62.8
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 1.4e-18 98.2 217 36.9
MCO04G495 Micromonas commoda HOM05D003466 ORTHO05D004102 7.7e-17 92.4 253 30.4
Rhsim07G0175900 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.3e-16 91.7 75 61.3
PRCOL_00005274 Prasinoderma coloniale HOM05D003466 ORTHO05D004102 8.5e-16 89.0 105 44.8
Os02g0294000 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 3.9e-13 80.1 208 33.2
MD01G1107400 Malus domestica HOM05D003466 ORTHO05D004102 3.1e-10 70.5 174 39.7
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 4.1e-10 70.1 222 50.9
CDE06G0675 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 2.0e-09 67.8 89 50.6
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 3.8e-08 63.5 357 43.1
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 8.5e-08 62.4 36 75.0
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 8.5e-08 62.4 36 75.0
AL8G27400 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 1.9e-07 61.2 64 51.6
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 2.1e-06 57.8 211 49.8
COL.COLO4_17202 Corchorus olitorius HOM05D003466 ORTHO05D004102 7.9e-06 55.8 80 42.5
DCAR_031305 Daucus carota HOM05D000822 ORTHO05D008442 7.9e-06 55.8 127 37.8


User provided reference genes

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