Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479491 Rosa chinensis HOM05D000026 ORTHO05D001436 6.6e-37 156.8 74 100.0
Prupe.7G077800 Prunus persica HOM05D000026 ORTHO05D001436 3.5e-22 107.8 77 70.1
FAN02G0727 Fragaria x ananassa HOM05D000026 ORTHO05D001436 3.9e-21 104.4 73 71.2
FvH4_6g22130 Fragaria vesca HOM05D000026 ORTHO05D001436 8.7e-21 103.2 73 69.9
FAN14G4450 Fragaria x ananassa HOM05D000026 ORTHO05D001436 8.7e-21 103.2 73 69.9
RcHm_v2.0_Chr3g0479461 Rosa chinensis HOM05D000026 ORTHO05D001436 8.7e-21 103.2 73 68.5
Cfa020159 Carpinus fangiana HOM05D000026 ORTHO05D001436 5.6e-20 100.5 77 66.2
QL07p023922 Quercus lobata HOM05D000026 ORTHO05D001436 6.2e-19 97.1 76 60.5
Gohir.D09G124400 Gossypium hirsutum HOM05D000026 ORTHO05D001436 8.1e-19 96.7 74 62.2
Gorai.006G143200 Gossypium raimondii HOM05D000026 ORTHO05D001436 8.1e-19 96.7 74 62.2
Thecc.05G172400 Theobroma cacao HOM05D000026 ORTHO05D001436 8.1e-19 96.7 72 63.9
COL.COLO4_22583 Corchorus olitorius HOM05D000026 ORTHO05D001436 1.4e-18 95.9 74 63.5
Gohir.A09G128400 Gossypium hirsutum HOM05D000026 ORTHO05D001436 1.4e-18 95.9 74 62.2
MD12G1056500 Malus domestica HOM05D000026 ORTHO05D001436 1.4e-18 95.9 77 61.0
QL04p009648 Quercus lobata HOM05D000026 ORTHO05D001436 1.4e-18 95.9 76 61.8
Duzib093G0759 Durio zibethinus HOM05D000026 ORTHO05D001436 1.8e-18 95.5 74 64.9
QL07p024024 Quercus lobata HOM05D000026 ORTHO05D001436 1.8e-18 95.5 76 61.8
AL6G16850 Arabidopsis lyrata HOM05D000026 ORTHO05D001436 4.0e-18 94.4 76 63.2
AT5G06740 Arabidopsis thaliana HOM05D000026 ORTHO05D001436 4.0e-18 94.4 76 63.2
A10p29640 Brassica napus HOM05D000026 ORTHO05D001436 4.0e-18 94.4 76 63.2
Ciclev10013890m.g Citrus clementina HOM05D000026 ORTHO05D001436 5.3e-18 94.0 76 61.8
Sp6g36110 Schrenkiella parvula HOM05D000026 ORTHO05D001436 5.3e-18 94.0 76 61.8
BraA10t45005Z Brassica rapa HOM05D000026 ORTHO05D001436 6.9e-18 93.6 76 61.8
QL04p009759 Quercus lobata HOM05D000026 ORTHO05D001436 6.9e-18 93.6 76 59.2
BcaC06g32390 Brassica carinata HOM05D000026 ORTHO05D001436 9.0e-18 93.2 76 61.8
C09p70010 Brassica napus HOM05D000026 ORTHO05D001436 9.0e-18 93.2 76 61.8
BolC9t59743H Brassica oleracea HOM05D000026 ORTHO05D001436 9.0e-18 93.2 76 61.8
Carub.0006s0562 Capsella rubella HOM05D000026 ORTHO05D001436 9.0e-18 93.2 76 61.8
CARHR206440 Cardamine hirsuta HOM05D000026 ORTHO05D001436 9.0e-18 93.2 71 66.2
QL04p009747 Quercus lobata HOM05D000026 ORTHO05D001436 9.0e-18 93.2 76 60.5
Cpa.g.sc85.52 Carica papaya HOM05D000026 ORTHO05D001436 1.2e-17 92.8 72 62.5
Thhalv10012919m.g Eutrema salsugineum HOM05D000026 ORTHO05D001436 1.2e-17 92.8 76 61.8
THA.LOC104809932 Tarenaya hassleriana HOM05D000026 ORTHO05D001436 1.2e-17 92.8 76 61.8
Haze_19998 Corylus avellana HOM05D000026 ORTHO05D001436 1.5e-17 92.4 73 63.0
QL04p009775 Quercus lobata HOM05D000026 ORTHO05D001436 1.5e-17 92.4 71 62.0
COL.COLO4_22585 Corchorus olitorius HOM05D000026 ORTHO05D001436 2.6e-17 91.7 71 62.0
MD14G1055200 Malus domestica HOM05D000026 ORTHO05D001436 2.6e-17 91.7 58 70.7
Thecc.05G172200 Theobroma cacao HOM05D000026 ORTHO05D001436 3.4e-17 91.3 72 63.9
CiPaw.10G026100 Carya illinoinensis HOM05D000026 ORTHO05D001436 4.5e-17 90.9 73 60.3
Potri.016G045000 Populus trichocarpa HOM05D000026 ORTHO05D001436 4.5e-17 90.9 76 56.6
Gorai.002G224000 Gossypium raimondii HOM05D000026 ORTHO05D001436 7.6e-17 90.1 72 62.5
Ca_12067_v3 Cicer arietinum L. HOM05D000026 ORTHO05D001436 9.9e-17 89.7 73 57.5
Ca_12070_v3 Cicer arietinum L. HOM05D000026 ORTHO05D001436 9.9e-17 89.7 73 57.5
Cfa020160 Carpinus fangiana HOM05D000026 ORTHO05D001436 1.3e-16 89.4 74 59.5
PGR142G3276 Punica granatum HOM05D000026 ORTHO05D001436 1.3e-16 89.4 77 58.4
VMungo0720G0595 Vigna mungo HOM05D000026 ORTHO05D001436 1.3e-16 89.4 75 57.3
CiPaw.09G029800 Carya illinoinensis HOM05D000026 ORTHO05D001436 1.7e-16 89.0 74 58.1
Potri.006G193000 Populus trichocarpa HOM05D000026 ORTHO05D001436 2.2e-16 88.6 76 59.2
QL04p009637 Quercus lobata HOM05D000026 ORTHO05D001436 2.2e-16 88.6 76 57.9
Thecc.05G172600 Theobroma cacao HOM05D000026 ORTHO05D001436 2.2e-16 88.6 75 58.7
Gohir.D01G178900 Gossypium hirsutum HOM05D000026 ORTHO05D001436 2.9e-16 88.2 72 61.1
CARHR206450 Cardamine hirsuta HOM05D000026 ORTHO05D001436 3.8e-16 87.8 71 62.0
COL.COLO4_22581 Corchorus olitorius HOM05D000026 ORTHO05D001436 3.8e-16 87.8 72 59.7
Haze_19999 Corylus avellana HOM05D000026 ORTHO05D001436 3.8e-16 87.8 54 72.2
Sc13g0002310 Simmondsia chinensis HOM05D000026 ORTHO05D001436 3.8e-16 87.8 73 56.2
CANSAT64G1030 Cannabis sativa HOM05D000026 ORTHO05D001436 4.9e-16 87.4 76 53.9
Lj5g0019748 Lotus japonicus HOM05D000026 ORTHO05D001436 4.9e-16 87.4 73 57.5
Glyma.09G110500 Glycine max HOM05D000026 ORTHO05D001436 6.4e-16 87.0 75 56.0
Glyma.09G110700 Glycine max HOM05D000026 ORTHO05D001436 6.4e-16 87.0 75 57.3
Medtr0015s0090 Medicago truncatula HOM05D000026 ORTHO05D001436 6.4e-16 87.0 73 57.5
Phvul.007G260300 Phaseolus vulgaris HOM05D000026 ORTHO05D001436 6.4e-16 87.0 75 57.3
CAN.G128.42 Capsicum annuum HOM05D000026 ORTHO05D001436 8.4e-16 86.7 72 58.3
Glyma.02G172200 Glycine max HOM05D000026 ORTHO05D001436 8.4e-16 86.7 75 56.0
Gohir.A01G191000 Gossypium hirsutum HOM05D000026 ORTHO05D001436 8.4e-16 86.7 72 61.1
Sed0011712 Sechium edule HOM05D000026 ORTHO05D001436 8.4e-16 86.7 73 58.9
THA.LOC104799292 Tarenaya hassleriana HOM05D000026 ORTHO05D001436 8.4e-16 86.7 76 57.9
TPR.G32357 Trifolium pratense HOM05D000026 ORTHO05D001436 8.4e-16 86.7 73 60.3
TWI53G0371 Tripterygium wilfordii HOM05D000026 ORTHO05D001436 8.4e-16 86.7 72 58.3
TWI74G1672 Tripterygium wilfordii HOM05D000026 ORTHO05D001436 8.4e-16 86.7 74 55.4
MELO3C009618.2 Cucumis melo HOM05D000026 ORTHO05D001436 1.9e-15 85.5 74 59.5
Duzib093G0104 Durio zibethinus HOM05D000026 ORTHO05D001436 1.9e-15 85.5 75 56.0
Medtr0015s0030 Medicago truncatula HOM05D000026 ORTHO05D001436 2.4e-15 85.1 70 60.0
Gohir.D01G178933 Gossypium hirsutum HOM05D000026 ORTHO05D001436 3.2e-15 84.7 72 61.1
Manes.08G043300 Manihot esculenta HOM05D000026 ORTHO05D001436 3.2e-15 84.7 76 56.6
TPR.G32333 Trifolium pratense HOM05D000026 ORTHO05D001436 3.2e-15 84.7 73 54.8
Manes.09G035900 Manihot esculenta HOM05D000026 ORTHO05D001436 4.2e-15 84.3 70 55.7
QL07p023993 Quercus lobata HOM05D000026 ORTHO05D001436 4.2e-15 84.3 76 59.2
Sed0000284 Sechium edule HOM05D000026 ORTHO05D001436 4.2e-15 84.3 73 57.5
Solyc10g080510.1 Solanum lycopersicum HOM05D000026 ORTHO05D001436 4.2e-15 84.3 75 57.3
Sopen10g031060 Solanum pennellii HOM05D000026 ORTHO05D001436 4.2e-15 84.3 75 57.3
CsaV3_3G038740 Cucumis sativus L. HOM05D000026 ORTHO05D001436 5.4e-15 84.0 75 57.3
Gohir.A01G191050 Gossypium hirsutum HOM05D000026 ORTHO05D001436 5.4e-15 84.0 72 61.1
Medtr0015s0060 Medicago truncatula HOM05D000026 ORTHO05D001436 5.4e-15 84.0 73 56.2
Sabra16G0049100 Salix brachista HOM05D000026 ORTHO05D001436 5.4e-15 84.0 72 56.9
Sabra06G0148500 Salix brachista HOM05D000026 ORTHO05D001436 9.3e-15 83.2 72 56.9
Hund24795 Selenicereus undatus HOM05D000026 ORTHO05D001436 9.3e-15 83.2 73 56.2
PGSC0003DMG400023671 Solanum tuberosum HOM05D000026 ORTHO05D001436 9.3e-15 83.2 76 57.9
ClCG10G017590 Citrullus lanatus HOM05D000026 ORTHO05D001436 1.2e-14 82.8 73 57.5
Psat3g147200 Pisum sativum HOM05D000026 ORTHO05D001436 1.2e-14 82.8 73 56.2
AL4G22160 Arabidopsis lyrata HOM05D000026 ORTHO05D001436 2.1e-14 82.0 76 59.2
Nitab4.5_0003600g0040 Nicotiana tabacum HOM05D000026 ORTHO05D001436 2.1e-14 82.0 75 54.7
Phvul.007G260400 Phaseolus vulgaris HOM05D000026 ORTHO05D001436 2.1e-14 82.0 74 58.1
Dinv14304 Davidia involucrata HOM05D000026 ORTHO05D001436 2.7e-14 81.6 75 54.7
Dinv14306 Davidia involucrata HOM05D000026 ORTHO05D001436 3.5e-14 81.3 76 57.9
Gohir.A01G191100 Gossypium hirsutum HOM05D000026 ORTHO05D001436 4.6e-14 80.9 74 58.1
Nitab4.5_0016838g0010 Nicotiana tabacum HOM05D000026 ORTHO05D001436 6.0e-14 80.5 74 52.7
Dinv14308 Davidia involucrata HOM05D000026 ORTHO05D001436 7.9e-14 80.1 75 54.7
Gohir.D01G178800 Gossypium hirsutum HOM05D000026 ORTHO05D001436 1.0e-13 79.7 74 56.8
Gorai.002G224100 Gossypium raimondii HOM05D000026 ORTHO05D001436 1.0e-13 79.7 74 56.8
CAN.G128.45 Capsicum annuum HOM05D000026 ORTHO05D001436 1.3e-13 79.3 75 53.3
Dinv14307 Davidia involucrata HOM05D000026 ORTHO05D001436 1.3e-13 79.3 75 53.3
Peaxi162Scf00480g00023 Petunia axillaris HOM05D000026 ORTHO05D001436 3.0e-13 78.2 76 52.6
Sabra06G0148300 Salix brachista HOM05D000026 ORTHO05D001436 3.0e-13 78.2 67 56.7
Sed0018171 Sechium edule HOM05D000026 ORTHO05D001436 3.0e-13 78.2 70 52.9
TAR369G0881 Trochodendron aralioides HOM05D000026 ORTHO05D001436 3.9e-13 77.8 75 53.3
TAR369G0974 Trochodendron aralioides HOM05D000026 ORTHO05D001436 3.9e-13 77.8 75 53.3
EL10Ac3g06901 Beta vulgaris HOM05D000026 ORTHO05D001436 5.1e-13 77.4 73 54.8
COL.COLO4_29322 Corchorus olitorius HOM05D000026 ORTHO05D001436 6.7e-13 77.0 79 48.1
EL10Ac8g18822 Beta vulgaris HOM05D000026 ORTHO05D001436 1.1e-12 76.3 73 53.4
Nn7g36004 Nelumbo nucifera HOM05D000026 ORTHO05D001436 1.1e-12 76.3 79 50.6
Eucgr.K01843 Eucalyptus grandis HOM05D000026 ORTHO05D001436 1.9e-12 75.5 72 51.4
COL.COLO4_07026 Corchorus olitorius HOM05D000026 ORTHO05D001436 2.5e-12 75.1 72 51.4
MELO3C009619.2 Cucumis melo HOM05D000026 ORTHO05D001436 2.5e-12 75.1 73 50.7
DCAR_013541 Daucus carota HOM05D000026 ORTHO05D001436 3.3e-12 74.7 77 53.2
CSS0019847 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D001436 5.6e-12 73.9 76 51.3
CSS0047828 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D001436 5.6e-12 73.9 76 51.3
Dinv14305 Davidia involucrata HOM05D000026 ORTHO05D001436 5.6e-12 73.9 72 50.0
Ah.13g075800 Amaranthus hybridus HOM05D000026 ORTHO05D001436 1.3e-11 72.8 73 53.4
AUR62015360 Chenopodium quinoa HOM05D000026 ORTHO05D001436 1.3e-11 72.8 71 52.1
CsaV3_3G038760 Cucumis sativus L. HOM05D000026 ORTHO05D001436 1.6e-11 72.4 72 51.4
AUR62012023 Chenopodium quinoa HOM05D000026 ORTHO05D001436 2.1e-11 72.0 70 52.9
Sed0002137 Sechium edule HOM05D000026 ORTHO05D001436 2.8e-11 71.6 71 52.1
Phvul.007G260500 Phaseolus vulgaris HOM05D000026 ORTHO05D001436 3.7e-11 71.2 54 61.1
GSVIVG01026016001 Vitis vinifera HOM05D000026 ORTHO05D001436 3.7e-11 71.2 74 52.7
Sc19g0006050 Simmondsia chinensis HOM05D000026 ORTHO05D001436 4.8e-11 70.9 72 52.8
TAR623G0241 Trochodendron aralioides HOM05D000026 ORTHO05D001436 4.8e-11 70.9 76 48.7
GSVIVG01026020001 Vitis vinifera HOM05D000026 ORTHO05D001436 4.8e-11 70.9 74 52.7
GSVIVG01033490001 Vitis vinifera HOM05D000026 ORTHO05D001436 4.8e-11 70.9 55 58.2
Sed0006503 Sechium edule HOM05D000026 ORTHO05D001436 6.2e-11 70.5 72 51.4
Ah.13g075790 Amaranthus hybridus HOM05D000026 ORTHO05D001436 8.1e-11 70.1 50 60.0
Sed0006224 Sechium edule HOM05D000026 ORTHO05D001436 8.1e-11 70.1 76 53.9
AUR62015358 Chenopodium quinoa HOM05D000026 ORTHO05D001436 3.1e-10 68.2 77 50.6
Sed0026040 Sechium edule HOM05D000026 ORTHO05D001436 5.3e-10 67.4 72 50.0
Sed0024853 Sechium edule HOM05D000106 ORTHO05D001436 1.2e-09 66.2 72 50.0
Sed0003585 Sechium edule HOM05D000026 ORTHO05D001436 2.0e-09 65.5 44 63.6
Sed0018490 Sechium edule HOM05D000026 ORTHO05D001436 2.0e-09 65.5 73 47.9
Actinidia38587 Actinidia chinensis HOM05D000026 ORTHO05D001436 2.6e-09 65.1 45 66.7
Lj2P365T30 Lonicera japonica HOM05D000026 ORTHO05D001436 5.8e-09 63.9 74 48.6
ClCG10G017640 Citrullus lanatus HOM05D000026 ORTHO05D001436 7.6e-09 63.5 75 45.3
MBI06_g05820_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D001436 1.3e-08 62.8 45 60.0
AUR62015357 Chenopodium quinoa HOM05D000026 ORTHO05D001436 3.8e-08 61.2 58 53.4
AUR62015359 Chenopodium quinoa HOM05D000026 ORTHO05D001436 8.4e-08 60.1 47 57.4
AUR62012022 Chenopodium quinoa HOM05D000026 ORTHO05D001436 2.5e-07 58.5 47 55.3
Os04g0584100 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D001436 5.5e-07 57.4 42 59.5
Zm00001eb072760 Zea mays HOM05D000026 ORTHO05D001436 7.1e-07 57.0 42 59.5
Os02g0712700 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D001436 9.3e-07 56.6 47 51.1
Zm00001eb092630 Zea mays HOM05D000026 ORTHO05D049967 1.2e-06 56.2 44 59.1
Os02g0712600 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D001436 2.1e-06 55.5 67 41.8
Gohir.A01G190932 Gossypium hirsutum HOM05D000026 ORTHO05D001436 6.0e-06 53.9 52 53.8
Os04g0109100 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D049764 6.0e-06 53.9 44 56.8
SEGI_17864 Sequoiadendron giganteum HOM05D000026 ORTHO05D001436 7.9e-06 53.5 47 51.1


User provided reference genes

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