Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 3.7e-197 691.4 366 100.0
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.8e-152 542.3 372 79.6
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.3e-151 539.3 372 79.0
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.3e-151 539.3 372 79.3
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 3.7e-149 531.9 373 78.8
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.9e-149 531.6 372 78.2
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 8.5e-77 291.6 412 51.5
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 8.0e-75 285.0 404 51.7
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.5e-68 264.2 399 47.6
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 3.6e-67 259.6 410 50.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.3e-66 256.9 390 50.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.2e-62 244.6 376 46.5
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.7e-61 240.7 398 46.7
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 8.0e-59 231.9 392 44.4
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.8e-58 230.7 381 45.1
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.8e-57 224.9 372 44.4
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.7e-56 224.2 386 46.1
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.7e-56 223.0 371 44.2
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.4e-55 220.3 376 45.5
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 9.2e-55 218.4 372 43.0
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 3.8e-53 213.0 307 47.9
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 7.3e-52 208.8 416 40.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.1e-51 207.2 382 43.5
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.0e-51 205.3 368 43.5
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.0e-50 204.9 391 41.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 4.0e-50 203.0 396 41.4
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 5.2e-50 202.6 378 44.4
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 7.5e-49 198.7 365 43.8
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 9.8e-49 198.4 402 42.8
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.3e-48 198.0 379 42.7
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.8e-47 194.1 386 42.0
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 3.2e-47 193.4 383 40.2
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 3.2e-47 193.4 400 42.5
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.1e-47 193.0 385 40.5
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 7.0e-47 192.2 363 41.0
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.6e-46 191.0 394 42.6
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 5.9e-46 189.1 398 40.7
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.0e-45 188.3 265 50.2
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.3e-45 187.2 394 41.6
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 5.0e-45 186.0 419 38.7
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.5e-44 184.5 376 41.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.6e-44 182.6 392 41.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.2e-43 181.4 383 40.5
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 5.2e-42 176.0 264 45.1
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 5.2e-42 176.0 389 40.6
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.8e-42 175.6 389 39.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.5e-41 174.5 387 39.5
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.0e-41 174.1 415 36.4
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 3.4e-41 173.3 386 39.6
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 4.4e-41 172.9 368 39.7
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.2e-40 170.6 447 37.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.2e-40 170.6 380 40.5
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.2e-40 170.6 382 38.2
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 3.7e-40 169.9 301 42.5
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.1e-39 168.3 398 40.2
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.4e-39 167.9 241 46.5
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.4e-39 167.2 352 40.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.2e-39 165.2 225 47.1
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 9.2e-39 165.2 387 35.4
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.0e-38 164.1 266 42.9
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.6e-38 162.9 254 47.2
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 6.0e-38 162.5 261 44.8
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 7.8e-38 162.2 367 38.1
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-37 161.8 421 37.1
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 2.3e-37 160.6 382 37.4
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.0e-37 160.2 367 37.9
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-36 158.3 385 39.0
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.5e-36 157.9 387 37.7
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 7.3e-36 155.6 370 37.0
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.6e-35 154.5 415 36.9
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.6e-35 154.5 283 41.7
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.3e-34 150.6 382 37.2
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 4.0e-34 149.8 380 39.7
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 5.2e-34 149.4 369 39.3
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 6.8e-34 149.1 220 43.2
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.7e-32 143.3 308 39.3
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 4.9e-32 142.9 185 49.2
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.4e-31 141.4 365 38.4
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.1e-31 139.8 282 41.1
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 9.2e-31 138.7 302 38.4
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 1.2e-30 138.3 304 38.2
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.5e-30 136.7 411 34.5
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.0e-29 135.2 374 34.8
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.0e-29 133.7 301 39.5
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.9e-28 131.0 398 36.2
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.6e-27 126.7 293 34.8
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 4.7e-27 126.3 368 34.2
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 6.2e-27 125.9 323 37.5
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 6.2e-27 125.9 251 41.4
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 8.1e-27 125.6 289 36.0
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.1e-26 125.2 139 52.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.8e-26 124.4 353 32.9
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.1e-26 123.6 366 33.9
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.1e-26 123.6 376 36.7
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 6.8e-26 122.5 227 40.1
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 7.6e-25 119.0 359 34.5
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 9.9e-25 118.6 296 37.2
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 9.9e-25 118.6 375 34.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.7e-24 117.9 372 33.6
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.7e-24 117.9 361 36.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 8.4e-24 115.5 368 34.8
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 8.4e-24 115.5 144 51.4
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.1e-23 115.2 351 33.6
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.1e-23 115.2 317 36.0
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.4e-23 114.8 315 35.2
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 9.2e-23 112.1 367 31.6
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.6e-22 111.3 128 50.8
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 6.0e-22 109.4 365 32.1
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 7.8e-22 109.0 384 32.3
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 7.8e-22 109.0 287 35.9
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 3.0e-21 107.1 308 34.4
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 3.9e-21 106.7 151 45.7
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 3.9e-21 106.7 161 42.9
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 5.1e-21 106.3 148 45.9
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 5.1e-21 106.3 141 46.8
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.5e-20 104.8 179 44.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.3e-20 103.6 287 34.8
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.3e-20 103.6 172 44.2
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-19 101.7 364 32.1
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.2e-19 101.7 146 44.5
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 4.7e-19 99.8 362 30.1
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.1e-19 99.0 161 42.2
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 8.1e-19 99.0 139 46.0
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 3.1e-18 97.1 364 31.3
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.1e-18 97.1 363 31.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.1e-18 97.1 178 37.6
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.2e-18 96.3 145 42.8
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.2e-17 95.1 364 29.9
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.5e-17 94.7 369 31.4
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 2.0e-17 94.4 163 39.3
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 2.2e-16 90.9 367 29.2
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.2e-16 90.9 138 41.3
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.9e-16 90.5 244 35.7
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 3.8e-16 90.1 367 28.3
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 3.8e-16 90.1 129 47.3
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.4e-16 89.4 128 43.8
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.4e-15 87.4 243 33.7
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.2e-15 86.7 87 49.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.2e-15 86.7 87 49.4
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 7.1e-15 85.9 191 39.8
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 9.3e-15 85.5 358 29.3
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.6e-14 84.7 187 39.6
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.7e-14 84.0 95 48.4
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 3.5e-14 83.6 323 30.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 3.5e-14 83.6 138 37.7
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 4.6e-14 83.2 367 29.7
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.0e-14 82.8 63 66.7
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 7.8e-14 82.4 360 30.6
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 7.8e-14 82.4 360 29.7
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 7.8e-14 82.4 360 30.6
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 7.8e-14 82.4 360 30.6
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 1.0e-13 82.0 133 39.8
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.7e-13 81.3 40 85.0
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 3.0e-13 80.5 359 30.1
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 8.7e-13 79.0 365 28.8
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.9e-12 77.8 85 45.9
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 7.3e-12 75.9 155 32.9
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 1.8e-10 71.2 78 53.8
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.0e-10 70.1 67 50.7
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.0e-09 67.8 91 46.2
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 4.5e-09 66.6 366 27.6
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.5e-09 66.6 121 37.2
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.8e-09 66.2 167 32.9
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 6.4e-08 62.8 274 25.5
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 1.1e-07 62.0 326 26.7
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 1.4e-07 61.6 124 35.5
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 1.9e-07 61.2 209 29.2
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 4.2e-07 60.1 275 25.5
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.4e-07 59.7 155 36.1
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 1.6e-06 58.2 135 34.8
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 2.7e-06 57.4 53 49.1


User provided reference genes

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