Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.5e-187 658.7 351 100.0
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 1.7e-178 629.4 351 88.0
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.7e-178 629.4 351 93.4
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.7e-178 629.4 351 88.0
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.7e-178 628.2 351 93.2
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.8e-178 627.9 351 90.6
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 4.2e-166 588.2 351 86.3
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 5.5e-166 587.8 351 80.9
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 5.2e-164 581.3 354 86.4
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 2.0e-160 569.3 355 78.0
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 2.6e-160 568.9 351 77.8
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 3.5e-160 568.5 352 79.8
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 7.7e-160 567.4 351 77.8
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 8.5e-159 563.9 354 82.5
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 1.9e-158 562.8 358 82.4
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 2.5e-158 562.4 351 76.6
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 7.2e-158 560.8 351 76.1
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 9.4e-158 560.5 351 75.8
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.2e-157 560.1 359 79.4
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.2e-157 560.1 353 77.6
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 1.8e-156 556.2 353 75.9
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 2.3e-156 555.8 353 79.6
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 3.0e-156 555.4 351 75.8
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 4.0e-156 555.1 351 75.8
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 5.2e-156 554.7 351 75.5
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 1.5e-155 553.1 352 75.3
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.0e-155 552.7 351 74.4
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 3.3e-155 552.0 352 78.7
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 4.4e-155 551.6 352 80.7
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 5.7e-155 551.2 351 74.6
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 2.2e-154 549.3 361 74.5
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 8.3e-154 547.4 355 73.5
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 1.1e-153 547.0 353 75.4
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.4e-153 545.8 355 73.2
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 7.0e-153 544.3 351 76.1
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.2e-152 543.5 355 74.1
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 1.2e-152 543.5 351 73.2
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 1.6e-152 543.1 351 72.6
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 2.0e-152 542.7 353 73.1
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 1.0e-151 540.4 351 72.6
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 1.3e-151 540.0 351 79.5
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.3e-151 540.0 355 73.2
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 2.2e-151 539.3 351 80.3
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 3.8e-151 538.5 365 77.8
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 5.0e-151 538.1 351 77.5
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 2.5e-150 535.8 351 72.1
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 7.2e-150 534.3 355 75.8
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 9.4e-150 533.9 360 70.0
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 9.4e-150 533.9 352 75.9
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 1.6e-149 533.1 361 69.3
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 4.7e-149 531.6 360 69.4
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 8.0e-149 530.8 355 76.9
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 1.0e-148 530.4 361 69.0
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 1.8e-148 529.6 351 70.9
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 1.8e-148 529.6 357 77.6
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 3.0e-148 528.9 353 78.2
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 4.0e-148 528.5 352 74.1
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 4.0e-148 528.5 351 71.8
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.5e-147 526.6 359 71.6
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 1.5e-147 526.6 351 72.9
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 2.0e-147 526.2 351 69.8
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 2.0e-147 526.2 360 73.9
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 3.4e-147 525.4 351 70.1
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.4e-147 525.4 351 70.7
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 4.4e-147 525.0 356 77.8
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 5.7e-147 524.6 360 77.2
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 5.7e-147 524.6 353 78.2
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 5.7e-147 524.6 361 76.2
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 7.5e-147 524.2 352 69.6
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.3e-146 523.5 360 77.2
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.7e-146 523.1 360 69.7
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 2.2e-146 522.7 352 71.0
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 2.2e-146 522.7 352 69.3
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 2.2e-146 522.7 352 75.3
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 2.8e-146 522.3 355 70.4
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 3.7e-146 521.9 355 77.5
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 3.7e-146 521.9 351 71.5
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 4.8e-146 521.5 352 69.3
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 1.1e-145 520.4 351 69.2
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 1.4e-145 520.0 363 74.7
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.4e-145 519.2 354 69.5
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 5.4e-145 518.1 345 76.8
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 7.0e-145 517.7 355 69.0
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.0e-145 517.7 351 71.5
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 1.2e-144 516.9 358 75.1
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 2.0e-144 516.2 356 74.2
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 2.0e-144 516.2 351 76.9
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 3.5e-144 515.4 353 68.3
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 5.9e-144 514.6 355 73.5
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.0e-143 513.8 351 69.8
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.7e-143 513.1 357 75.1
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 2.3e-143 512.7 355 73.5
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 3.8e-143 511.9 353 70.0
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 6.6e-143 511.1 351 68.4
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 8.6e-143 510.8 351 71.5
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 8.6e-143 510.8 351 68.4
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 1.1e-142 510.4 355 74.1
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 1.5e-142 510.0 351 69.2
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 7.2e-142 507.7 351 67.8
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 1.6e-141 506.5 356 67.7
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 2.8e-141 505.8 358 75.1
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.8e-140 503.1 352 71.6
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.3e-140 502.7 351 67.5
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 2.0e-139 499.6 394 61.7
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 3.4e-139 498.8 351 72.6
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 4.4e-139 498.4 351 67.8
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 4.4e-139 498.4 364 69.0
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 1.3e-138 496.9 358 66.8
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 1.1e-137 493.8 352 66.5
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 3.2e-137 492.3 355 66.5
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.0e-135 487.3 353 70.0
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.9e-135 485.7 351 65.5
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 6.6e-135 484.6 352 68.5
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 2.8e-133 479.2 332 67.5
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 6.1e-133 478.0 365 64.9
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 6.8e-132 474.6 355 65.6
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.0e-131 473.0 348 65.8
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 9.8e-131 470.7 359 68.8
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 2.9e-130 469.2 352 63.6
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 2.4e-129 466.1 355 62.8
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 1.2e-128 463.8 351 63.2
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 4.6e-128 461.8 336 65.2
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.3e-127 460.3 353 61.5
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 2.3e-127 459.5 353 62.0
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 1.5e-126 456.8 361 61.8
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 6.2e-125 451.4 356 60.4
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 5.2e-124 448.4 351 62.1
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 5.2e-124 448.4 323 75.2
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 3.4e-123 445.7 351 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 9.2e-121 437.6 351 59.3
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.8e-116 423.3 297 70.7
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 1.4e-113 413.7 296 71.6
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.2e-109 400.6 354 58.8
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 1.3e-103 380.6 294 65.3
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 2.3e-103 379.8 327 59.9
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 1.5e-102 377.1 353 55.8
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.5e-99 367.1 274 70.8
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 8.2e-77 291.6 351 45.9
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.1e-76 289.7 214 69.2
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 1.4e-73 280.8 272 57.0
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.6e-69 267.3 242 58.7
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 9.0e-68 261.5 156 76.3
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 7.7e-67 258.5 349 41.3
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 2.0e-62 243.8 356 42.7
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.7e-58 230.7 175 68.6
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 8.2e-53 211.8 115 84.3
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.1e-52 211.5 126 78.6
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.2e-50 203.8 126 73.8
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 7.2e-33 145.6 130 69.2
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.4e-33 145.2 85 74.1
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.2e-32 144.8 85 74.1
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 1.2e-32 144.8 138 54.3
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.7e-32 143.7 85 72.9
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 3.6e-32 143.3 164 48.8
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 5.2e-31 139.4 85 71.8
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 7.0e-28 129.0 185 41.1
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 3.8e-26 123.2 106 60.4
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 4.4e-22 109.8 185 38.4
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 7.5e-22 109.0 148 37.2
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 9.8e-22 108.6 63 79.4
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.2e-21 107.5 59 83.1
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 4.9e-21 106.3 58 84.5
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 4.9e-21 106.3 58 84.5
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 2.7e-19 100.5 74 64.9
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 6.6e-18 95.9 60 73.3
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 1.1e-17 95.1 55 80.0
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.3e-17 93.6 80 58.8
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 4.3e-17 93.2 76 63.2
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.3e-17 93.2 59 72.9
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 4.4e-14 83.2 49 69.4
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 1.1e-12 78.6 149 28.9
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.4e-12 78.2 37 81.1
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 1.9e-12 77.8 73 49.3
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 1.9e-12 77.8 64 54.7
MCO13G471 Micromonas commoda HOM05D003641 ORTHO05D049026 3.9e-10 70.1 175 31.4
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 8.6e-10 68.9 82 45.1
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 9.5e-09 65.5 161 27.3
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.2e-08 65.1 50 58.0
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 2.0e-06 57.8 49 53.1
SGA_v2.0_scaffold196G40950 Striga asiatica HOM05D003641 ORTHO05D403144 4.4e-06 56.6 53 43.4


User provided reference genes

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