Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 5.8e-141 504.2 254 100.0
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 6.0e-122 441.0 263 85.2
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 9.6e-120 433.7 263 84.8
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 5.3e-110 401.4 267 76.0
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 1.7e-108 396.4 279 73.5
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 3.0e-105 385.6 261 74.3
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 3.3e-104 382.1 263 76.0
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 3.3e-104 382.1 263 76.0
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.3e-104 381.7 251 74.9
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 9.7e-104 380.6 262 72.5
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 2.8e-103 379.0 210 85.2
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 1.1e-102 377.1 258 73.6
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 1.1e-102 377.1 268 72.4
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 1.1e-102 377.1 250 74.0
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 1.4e-102 376.7 250 74.4
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 1.8e-102 376.3 251 74.9
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 5.3e-102 374.8 260 72.3
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 5.3e-102 374.8 260 72.3
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 5.3e-102 374.8 252 74.6
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 9.0e-102 374.0 253 75.1
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 1.5e-101 373.2 251 72.1
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 1.5e-101 373.2 219 80.4
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 2.0e-101 372.9 264 72.0
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 2.0e-101 372.9 269 71.4
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 3.4e-101 372.1 250 75.2
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 4.5e-101 371.7 254 74.0
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 4.5e-101 371.7 262 71.8
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 1.0e-100 370.5 200 84.5
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 1.7e-100 369.8 246 74.8
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 1.7e-100 369.8 258 72.9
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 2.9e-100 369.0 260 70.4
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 6.5e-100 367.9 250 71.2
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 6.5e-100 367.9 253 74.7
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 8.5e-100 367.5 216 79.6
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 1.2e-98 363.6 216 80.6
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 3.6e-98 362.1 265 71.3
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 4.6e-98 361.7 248 72.2
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 6.1e-98 361.3 200 83.5
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 7.9e-98 360.9 202 82.2
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.4e-97 360.1 213 79.8
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 1.4e-97 360.1 239 74.1
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 8.8e-97 357.5 260 69.6
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 8.8e-97 357.5 209 80.4
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 2.5e-96 355.9 221 78.7
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 2.5e-96 355.9 246 71.5
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 2.5e-96 355.9 198 81.8
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 2.5e-96 355.9 194 84.0
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 3.3e-96 355.5 250 75.6
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 5.7e-96 354.8 235 72.3
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 7.4e-96 354.4 212 77.8
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 9.7e-96 354.0 216 77.8
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 1.3e-95 353.6 209 78.9
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 1.3e-95 353.6 199 82.4
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 1.3e-95 353.6 272 66.2
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 2.8e-95 352.4 218 75.7
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 3.7e-95 352.1 253 68.8
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 3.7e-95 352.1 209 78.5
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 3.7e-95 352.1 243 72.8
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 4.8e-95 351.7 216 77.3
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 6.3e-95 351.3 243 72.4
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 6.3e-95 351.3 253 70.0
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.1e-94 350.5 214 78.5
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 1.1e-94 350.5 221 75.6
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 1.8e-94 349.7 218 75.7
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 1.8e-94 349.7 213 77.5
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 1.8e-94 349.7 213 77.5
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 3.1e-94 349.0 216 75.9
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 5.3e-94 348.2 209 78.0
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 5.3e-94 348.2 243 72.0
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 2.0e-93 346.3 259 65.6
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 4.5e-93 345.1 244 70.5
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 8.5e-92 340.9 194 80.9
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 1.1e-91 340.5 229 72.5
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 1.4e-91 340.1 221 74.7
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 1.9e-91 339.7 275 65.1
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 1.2e-90 337.0 198 78.8
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 6.1e-90 334.7 200 74.5
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 1.0e-89 334.0 208 83.2
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 2.0e-88 329.7 273 63.0
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 9.7e-88 327.4 215 73.5
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 1.3e-87 327.0 210 72.4
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 8.2e-87 324.3 209 73.2
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 4.1e-86 322.0 190 76.8
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 3.8e-84 315.5 237 66.7
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 3.2e-83 312.4 265 64.2
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 1.6e-82 310.1 196 72.4
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 1.8e-81 306.6 271 62.4
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 3.0e-81 305.8 271 62.4
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 1.1e-80 303.9 167 81.4
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 3.3e-80 302.4 216 69.4
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 1.8e-78 296.6 168 79.2
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.3e-76 290.4 171 76.0
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 1.3e-76 290.4 290 54.8
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-75 287.3 186 70.4
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 1.9e-75 286.6 275 58.5
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 2.6e-72 276.2 163 74.8
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 2.2e-68 263.1 213 65.3
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.0e-60 237.7 164 77.4
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 7.3e-59 231.5 188 66.5
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 6.8e-57 224.9 180 66.7
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 4.4e-56 222.2 121 81.8
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 4.9e-55 218.8 239 54.0
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.7e-50 202.2 121 73.6
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 1.8e-49 200.3 210 55.7
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 2.6e-48 196.4 262 48.5
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 5.8e-48 195.3 171 64.9
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 3.9e-44 182.6 487 32.2
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 1.2e-42 177.6 109 77.1
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 6.4e-39 165.2 94 76.6
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 8.1e-34 148.3 215 43.7
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 3.1e-33 146.4 73 86.3
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 7.8e-29 131.7 76 76.3
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 1.2e-26 124.4 72 75.0
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 8.4e-15 85.1 96 50.0
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-10 69.3 38 86.8


User provided reference genes

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