Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 1.5e-155 552.7 275 100.0
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 3.6e-136 488.4 273 89.7
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 3.6e-136 488.4 273 89.7
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 8.8e-135 483.8 273 88.3
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 2.2e-133 479.2 270 88.5
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 4.0e-111 405.2 280 75.0
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 1.8e-108 396.4 273 74.4
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 8.6e-90 334.3 269 63.9
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 1.5e-89 333.6 282 62.8
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 1.6e-88 330.1 279 64.2
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 5.2e-87 325.1 278 64.0
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 5.2e-87 325.1 278 64.0
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 5.8e-86 321.6 280 62.5
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 7.5e-86 321.2 273 60.4
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 8.3e-85 317.8 279 62.0
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 1.4e-84 317.0 279 59.5
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 4.1e-84 315.5 279 60.6
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 1.6e-83 313.5 259 63.7
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 1.6e-83 313.5 275 61.1
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 2.1e-83 313.2 279 60.2
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 3.0e-82 309.3 279 60.9
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 7.3e-81 304.7 283 58.7
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 8.9e-79 297.7 280 58.6
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 2.0e-78 296.6 225 68.0
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 3.4e-78 295.8 280 58.6
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 3.4e-78 295.8 280 58.2
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 3.4e-78 295.8 280 57.9
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 5.8e-78 295.0 274 59.9
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 1.4e-76 290.4 210 65.7
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 5.4e-76 288.5 200 69.5
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 3.0e-74 282.7 277 54.9
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 6.6e-74 281.6 234 60.3
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 7.3e-73 278.1 215 63.3
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 9.6e-73 277.7 228 61.8
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 1.2e-72 277.3 270 55.9
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.6e-72 276.9 281 55.9
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 1.6e-72 276.9 290 54.1
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 2.8e-72 276.2 275 53.8
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 2.8e-72 276.2 252 56.7
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 4.7e-72 275.4 279 54.1
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 8.1e-72 274.6 277 54.5
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 1.4e-71 273.9 226 61.5
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 1.8e-71 273.5 260 55.4
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 6.8e-71 271.6 187 71.7
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 1.5e-70 270.4 276 53.3
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 3.4e-70 269.2 228 60.5
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 4.4e-70 268.9 200 64.0
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 4.4e-70 268.9 236 60.2
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 5.8e-70 268.5 275 56.0
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 1.3e-69 267.3 229 57.6
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 2.2e-69 266.5 200 65.5
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 3.8e-69 265.8 237 55.7
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 4.9e-69 265.4 271 54.2
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 4.9e-69 265.4 200 64.0
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 8.4e-69 264.6 201 64.2
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 1.9e-68 263.5 274 56.2
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 2.4e-68 263.1 271 53.9
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 3.2e-68 262.7 232 59.9
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 3.2e-68 262.7 200 63.0
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 4.2e-68 262.3 198 65.7
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 4.2e-68 262.3 243 56.0
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 9.3e-68 261.2 278 52.5
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 1.2e-67 260.8 235 58.3
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 1.6e-67 260.4 221 58.4
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 2.1e-67 260.0 270 52.2
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 2.7e-67 259.6 270 52.2
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 3.5e-67 259.2 204 62.3
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 6.0e-67 258.5 236 58.9
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 6.0e-67 258.5 236 58.9
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 6.0e-67 258.5 236 58.9
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 1.7e-66 256.9 234 56.8
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 3.0e-66 256.1 271 51.3
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 6.6e-66 255.0 241 56.8
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.5e-65 253.8 211 62.1
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 5.6e-65 251.9 211 61.6
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.8e-64 248.8 270 51.9
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 1.4e-63 247.3 205 59.0
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 1.4e-63 247.3 222 55.4
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 4.0e-63 245.7 245 52.2
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.0e-63 245.7 270 53.0
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 1.2e-62 244.2 245 51.8
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 4.9e-61 238.8 245 51.8
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 6.4e-61 238.4 265 52.1
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 4.2e-60 235.7 222 55.0
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 9.3e-60 234.6 264 50.4
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 6.0e-59 231.9 262 48.1
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 1.3e-58 230.7 265 48.7
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 1.5e-57 227.3 265 47.9
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 4.3e-57 225.7 217 53.5
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 2.8e-56 223.0 224 52.2
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 1.8e-55 220.3 199 55.3
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 9.0e-55 218.0 193 54.9
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 2.0e-54 216.9 193 56.0
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 1.7e-53 213.8 274 45.6
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 1.7e-53 213.8 153 69.9
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 9.3e-52 208.0 257 45.1
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 3.0e-50 203.0 196 53.6
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 6.7e-50 201.8 236 47.9
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 6.7e-50 201.8 241 46.9
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 5.3e-47 192.2 160 60.6
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 6.5e-45 185.3 234 45.7
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 2.7e-43 179.9 137 66.4
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 1.2e-38 164.5 137 59.9
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.8e-32 143.3 134 56.0
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 3.1e-31 139.8 245 34.7
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.7e-29 134.0 185 38.9
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 3.6e-27 126.3 189 42.3
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 6.7e-18 95.5 164 35.4
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 2.0e-17 94.0 189 30.2
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.7e-16 90.9 63 66.7
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 2.4e-15 87.0 140 33.6
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 3.1e-15 86.7 65 63.1
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.2e-14 84.7 124 36.3
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 4.5e-14 82.8 75 52.0
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 1.3e-13 81.3 70 62.9
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 3.8e-13 79.7 70 61.4
Nn3g21845 Nelumbo nucifera HOM05D006815 ORTHO05D008536 4.1e-07 59.7 41 68.3


User provided reference genes

Program Settings