Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 7.1e-99 364.0 192 100.0
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 5.1e-97 357.8 193 98.4
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 5.1e-97 357.8 193 98.4
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.1e-96 356.7 193 97.9
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 4.3e-96 354.8 193 97.4
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 5.2e-94 347.8 194 95.4
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 2.2e-92 342.4 192 93.8
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 7.1e-91 337.4 193 91.2
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 7.1e-91 337.4 192 92.2
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 3.0e-89 332.0 192 89.1
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 3.0e-89 332.0 192 89.1
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 1.5e-88 329.7 192 88.5
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 2.5e-88 328.9 194 90.2
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 2.4e-86 322.4 194 88.7
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 4.0e-86 321.6 195 87.7
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 4.0e-86 321.6 193 86.5
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 1.5e-85 319.7 192 87.5
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 2.0e-85 319.3 192 87.5
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 2.6e-85 318.9 192 87.0
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 3.4e-85 318.5 192 88.0
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 4.5e-85 318.2 192 87.5
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 4.5e-85 318.2 194 88.1
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 5.8e-85 317.8 192 87.0
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 7.6e-85 317.4 192 87.5
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 9.9e-85 317.0 192 86.5
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 9.9e-85 317.0 195 86.7
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 1.3e-84 316.6 192 87.0
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 2.9e-84 315.5 195 86.7
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 2.9e-84 315.5 195 86.2
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 2.9e-84 315.5 195 86.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 4.9e-84 314.7 195 85.6
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.1e-83 313.5 195 85.6
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.9e-83 312.8 194 86.1
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 4.2e-83 311.6 193 85.0
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 5.4e-83 311.2 195 86.7
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 5.4e-83 311.2 192 85.4
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.2e-82 310.1 194 86.1
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.5e-82 308.5 193 83.9
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 3.5e-82 308.5 195 83.6
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.8e-81 306.2 195 85.6
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 3.0e-81 305.4 180 88.3
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 3.9e-81 305.1 193 83.9
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 3.9e-81 305.1 193 83.9
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 6.7e-81 304.3 191 86.4
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.5e-80 303.1 194 84.5
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.5e-80 302.4 193 83.4
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 2.5e-80 302.4 193 83.9
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.3e-80 302.0 194 84.5
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 7.4e-80 300.8 194 83.5
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 7.4e-80 300.8 193 83.4
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 7.4e-80 300.8 195 83.1
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 9.6e-80 300.4 188 86.7
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 9.6e-80 300.4 192 85.4
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 2.8e-79 298.9 195 82.1
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 3.7e-79 298.5 193 83.4
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 4.8e-79 298.1 194 83.0
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 6.2e-79 297.7 194 83.0
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 6.2e-79 297.7 194 82.5
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 6.2e-79 297.7 193 82.9
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 8.1e-79 297.4 191 83.2
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.4e-78 296.6 195 82.6
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.4e-78 296.6 195 82.6
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.8e-78 296.2 195 82.1
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.8e-78 296.2 195 81.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.8e-78 296.2 195 81.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.8e-78 296.2 195 81.5
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 4.0e-78 295.0 195 82.1
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 4.0e-78 295.0 190 82.1
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 5.3e-78 294.7 191 83.8
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 5.3e-78 294.7 195 82.1
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 6.9e-78 294.3 193 82.4
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 9.0e-78 293.9 193 80.8
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.5e-77 293.1 190 82.1
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.6e-77 292.4 189 82.5
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 3.8e-76 288.5 189 83.6
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 8.4e-76 287.3 195 80.5
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 8.4e-76 287.3 194 80.4
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.4e-75 286.6 194 80.4
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 3.2e-75 285.4 194 80.9
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 5.5e-75 284.6 189 80.4
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.5e-75 284.6 189 81.5
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.2e-74 283.5 194 77.3
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 1.6e-74 283.1 198 77.8
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 2.1e-74 282.7 193 78.8
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 3.5e-74 282.0 188 80.9
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 3.5e-74 282.0 189 80.4
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 7.9e-74 280.8 193 79.3
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 7.9e-74 280.8 194 77.3
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.9e-72 276.2 189 76.7
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 5.6e-72 274.6 189 76.7
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 1.3e-71 273.5 188 77.7
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.3e-71 273.5 193 75.1
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 3.1e-70 268.9 183 76.5
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 4.0e-70 268.5 187 76.5
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 5.3e-70 268.1 196 77.0
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 9.0e-70 267.3 197 71.1
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.1e-67 260.4 195 73.8
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 1.9e-67 259.6 177 78.0
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 6.0e-66 254.6 174 79.3
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 2.3e-65 252.7 187 71.1
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 2.5e-64 249.2 190 73.2
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 5.7e-64 248.1 184 70.7
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 2.8e-63 245.7 200 65.5
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 6.3e-63 244.6 198 66.7
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 7.6e-61 237.7 208 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 2.2e-60 236.1 189 66.1
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 8.5e-60 234.2 136 91.9
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 4.2e-59 231.9 184 66.3
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.1e-56 223.8 184 59.8
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 5.7e-56 221.5 195 68.7
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 8.2e-55 217.6 136 88.2
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 9.1e-54 214.2 135 83.7
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.9e-51 206.5 193 63.7
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 4.4e-48 195.3 167 66.5
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.1e-46 189.1 191 61.8
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 1.0e-44 184.1 132 77.3
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 2.2e-44 183.0 115 87.0
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.5e-43 178.3 194 56.2
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.6e-42 176.8 126 78.6
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.2e-37 160.6 101 79.2
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 6.5e-36 154.8 135 68.1
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.3e-33 146.4 164 43.3
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 5.7e-32 141.7 96 77.1
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 5.3e-30 135.2 104 71.2
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 5.9e-29 131.7 106 67.0
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 4.5e-21 105.5 82 73.2
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 5.9e-21 105.1 71 83.1
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 6.1e-18 95.1 171 34.5
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 3.4e-16 89.4 46 87.0
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 4.9e-15 85.5 164 32.3
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 6.3e-15 85.1 77 66.2
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 4.0e-09 65.9 39 79.5
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 9.2e-06 54.7 54 66.7


User provided reference genes

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