Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 2.9e-235 818.1 408 100.0
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 5.5e-218 760.8 408 92.4
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.5e-218 760.8 408 92.4
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.5e-212 741.1 398 92.0
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.2e-211 738.8 398 91.5
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.5e-210 736.1 400 91.0
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.6e-209 731.5 408 88.2
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.5e-207 726.1 408 86.5
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.9e-202 709.1 408 86.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 5.5e-202 707.6 408 85.8
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 6.1e-201 704.1 408 84.1
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 4.5e-196 688.0 407 84.0
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 4.5e-196 688.0 407 84.0
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 6.6e-195 684.1 407 83.3
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-194 683.3 408 80.9
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.9e-194 682.6 408 81.9
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.3e-192 675.6 411 78.6
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.3e-192 675.6 409 80.0
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 6.8e-192 674.1 408 78.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 8.9e-192 673.7 410 79.8
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.6e-191 672.2 408 79.2
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 3.4e-191 671.8 409 79.7
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 7.5e-191 670.6 408 79.9
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.3e-190 669.8 408 78.9
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.2e-190 669.1 408 78.9
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.2e-190 669.1 408 78.7
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 4.9e-190 667.9 408 78.4
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 4.9e-190 667.9 409 81.2
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 6.4e-190 667.5 408 81.1
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.1e-189 666.8 408 79.4
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 2.4e-189 665.6 408 80.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 3.5e-188 661.8 408 77.9
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 4.6e-188 661.4 408 77.7
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 7.8e-188 660.6 408 77.2
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.7e-187 659.4 408 77.7
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.0e-187 657.9 408 77.7
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 6.6e-187 657.5 408 78.9
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.3e-186 654.8 408 78.2
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.2e-185 653.3 408 77.9
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.1e-185 652.5 408 77.9
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 9.8e-183 643.7 408 77.2
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.9e-182 642.1 407 77.4
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.7e-182 641.7 408 77.2
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.9e-181 639.4 408 76.5
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 7.0e-181 637.5 407 77.1
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 9.2e-181 637.1 408 76.7
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.2e-180 636.7 408 76.7
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.5e-180 635.2 408 77.2
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 4.6e-180 634.8 409 75.3
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.8e-180 634.0 408 76.0
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 5.1e-179 631.3 408 75.7
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 8.6e-179 630.6 410 75.4
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.1e-178 630.2 402 75.9
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.5e-178 629.8 408 75.2
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.5e-178 629.0 405 76.5
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.3e-178 628.2 409 74.1
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 9.5e-178 627.1 408 73.8
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 6.2e-177 624.4 407 75.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.8e-176 622.9 408 74.0
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.8e-176 622.9 407 74.9
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 6.8e-176 620.9 408 72.8
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.0e-175 619.4 408 72.3
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.0e-175 619.4 409 73.3
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 4.4e-175 618.2 412 73.8
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.4e-175 618.2 408 73.3
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 7.5e-175 617.5 412 73.5
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.3e-174 616.7 412 73.3
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 2.2e-174 615.9 412 73.3
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 3.7e-174 615.1 409 73.6
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 73.5
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 4.9e-174 614.8 409 74.6
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 6.4e-174 614.4 408 73.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.9e-173 612.8 409 73.6
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.9e-173 612.8 408 74.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.4e-173 612.5 408 73.0
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.2e-173 612.1 402 73.6
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.1e-173 611.7 409 72.6
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 9.2e-173 610.5 412 72.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 9.2e-173 610.5 412 72.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 9.2e-173 610.5 412 72.6
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 9.2e-173 610.5 410 71.5
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 4.6e-172 608.2 439 70.6
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.0e-171 607.1 408 72.3
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.9e-171 605.1 401 71.8
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 3.9e-171 605.1 401 71.8
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.1e-171 604.7 408 70.6
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.9e-170 602.8 402 71.6
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.5e-170 602.4 402 73.1
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 7.3e-170 600.9 406 73.6
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 7.3e-170 600.9 408 71.1
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 9.5e-170 600.5 409 71.1
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 3.6e-169 598.6 406 71.7
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 8.1e-169 597.4 412 72.3
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.4e-168 596.7 405 74.3
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.0e-168 595.1 405 74.1
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 2.0e-167 592.8 410 71.7
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-167 592.8 406 72.2
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.6e-167 592.4 403 73.0
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 7.6e-167 590.9 405 70.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 9.9e-167 590.5 405 70.9
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 2.9e-166 589.0 403 73.4
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.1e-165 587.0 408 71.8
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.2e-165 585.5 403 72.0
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.6e-164 583.2 423 67.8
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.7e-163 579.7 402 70.6
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 8.7e-163 577.4 407 70.3
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.1e-162 577.0 360 76.7
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 2.8e-161 572.4 356 77.5
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.2e-159 567.0 408 68.1
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.4e-157 560.1 494 60.3
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.1e-154 550.4 409 66.5
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.3e-153 547.0 409 66.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.3e-153 547.0 313 87.2
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.4e-152 543.5 402 65.2
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 4.0e-152 542.0 405 65.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.0e-152 542.0 405 65.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.5e-146 522.7 351 72.4
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 7.1e-141 504.6 404 61.6
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.6e-140 501.9 403 59.3
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 8.7e-139 497.7 408 62.3
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.2e-135 487.3 416 58.2
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.2e-132 477.2 315 73.3
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-132 477.2 403 57.1
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 4.8e-121 438.7 273 76.2
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.2e-116 424.1 360 58.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.5e-111 405.6 267 74.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 4.5e-111 405.6 273 70.0
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 8.5e-110 401.4 313 61.0
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.1e-104 382.9 408 48.0
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 7.7e-103 378.3 426 46.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.0e-102 375.6 412 54.6
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.1e-96 356.3 422 46.9
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.5e-93 347.4 411 46.2
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 4.5e-87 325.9 253 68.0
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.3e-78 297.0 443 40.4
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 2.0e-71 273.9 161 82.6
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 6.6e-70 268.9 176 73.9
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 8.6e-70 268.5 173 77.5
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.1e-67 261.5 176 72.2
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 6.0e-63 245.7 135 90.4
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.3e-61 238.8 213 54.0
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 7.6e-58 228.8 173 62.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 3.9e-54 216.5 340 37.4
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.1e-52 208.8 193 56.0
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.2e-49 200.7 112 83.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 2.9e-49 200.3 148 64.2
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 4.3e-37 159.8 93 80.6
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.4e-32 144.8 100 70.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 6.9e-27 125.9 97 68.0
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 1.6e-23 114.8 84 76.2
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.1e-19 102.1 70 71.4
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 3.8e-17 93.6 255 29.8
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.8e-12 76.6 57 71.9


User provided reference genes

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